Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL115_RS01815 Genome accession   NZ_LR134307
Coordinates   344655..346613 (+) Length   652 a.a.
NCBI ID   WP_006270051.1    Uniprot ID   A0AAD2SVG1
Organism   Streptococcus milleri strain NCTC10708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 339655..351613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS01795 (NCTC10708_00362) rsmH 339738..340688 (+) 951 WP_126441177.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EL115_RS01800 (NCTC10708_00363) ftsL 340697..341014 (+) 318 WP_003070323.1 cell division protein FtsL -
  EL115_RS01805 (NCTC10708_00364) pbp2X 341018..343276 (+) 2259 WP_003070322.1 penicillin-binding protein PBP2X -
  EL115_RS01810 (NCTC10708_00365) mraY 343278..344261 (+) 984 WP_126441179.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  EL115_RS01815 (NCTC10708_00366) amiA 344655..346613 (+) 1959 WP_006270051.1 peptide ABC transporter substrate-binding protein Regulator
  EL115_RS01825 (NCTC10708_00368) - 347069..347950 (+) 882 WP_126441180.1 class II fructose-bisphosphate aldolase -
  EL115_RS01835 (NCTC10708_00370) - 348383..348829 (+) 447 WP_003025913.1 LytTR family DNA-binding domain-containing protein -
  EL115_RS01840 (NCTC10708_00371) - 348835..349497 (+) 663 WP_003070318.1 LiaF transmembrane domain-containing protein -
  EL115_RS01845 (NCTC10708_00372) rpmB 349632..349820 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  EL115_RS01850 (NCTC10708_00373) - 350014..350379 (+) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72482.63 Da        Isoelectric Point: 8.2688

>NTDB_id=1120869 EL115_RS01815 WP_006270051.1 344655..346613(+) (amiA) [Streptococcus milleri strain NCTC10708]
MKSSKWIIATGVVLSTGILLAGCGKSTSNTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
VDDYTVQYTLSRTEPYWNSKTTNNILFPVNSDFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKSSTQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGAAKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLTD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGADNVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENAKIKAVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSALTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
QKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1120869 EL115_RS01815 WP_006270051.1 344655..346613(+) (amiA) [Streptococcus milleri strain NCTC10708]
ATGAAATCATCAAAATGGATTATTGCAACGGGAGTTGTGCTAAGCACTGGAATCTTATTAGCAGGTTGTGGCAAGTCAAC
TTCTAATACGTCAACATACTCATATGTGTATACACAAGATCCAGACACGTTGAATTATCTGATGGCTAATCGTGCGACAA
CTTCAGATGTTGTGACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGAAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACCTATACCTATAAATTACGTAAAGACGCAAAATGGTACACATCAGAAGGTGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTGACAGGTTTGAAATATGCTGCAGATAATAAATCTGAAGCCCTTTACC
TTGTGCAAGATTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAACAGTTGGTGTGAAAGCT
GTAGATGATTATACAGTACAGTATACTTTAAGTCGTACGGAACCTTATTGGAATTCAAAAACAACTAATAATATTCTCTT
TCCAGTGAATTCGGACTTTTTGAAATCGCAAGGAAAGAATTTTGGTTCTGTGAAACCTAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CACTTGGACAATATCAAATTGACTTATTATGATGGATCGGACCAAGAAGCGCTTATCCGAAACTTCACAGATGGCGCCTA
TAGTGCGGCTCGTCTCTATCCAAATAGTTCAAGTTTTGCTTCTGTCAAGAAACAATATGCCAACAATATCATCTATAGTT
TACAAGATGCAACTAGTTATTATTACAATTTTAACTTAAATCGTCAGTCTTACAATCACACATCTAAGAAAACAGATGCT
CAAAAATCTTCAACGCAAGAAGCGGTACTAAACAAAGCCTTTCGTCAAGCTATCAACTTTGCTTATAACCGCACTTCTTA
CGGTGCACAAAGTAATGGGAAAGATGGTGCAGCAAAGGTGTTGCGGAACACGCTCGTGCCACCAACATTTGTTTCCATTG
GAGATAAGACTTTTGGCGATGTGGTATCCTCTAAATTAGTAAATTATGGTTCAGAATGGTCTAATATGAATCTGACTGAT
GCGCAAGATGCTTACTACAATCCAGAAAAAGCAAAAGCTAAATTTGCTCAGGCAAAAGCAGAATTGCAAGCCAAAGGTGT
TCAATTTCCCATTCACTTAGACGTACCAGCTGATCAAACTAGTAAAATCGGTGTTCAGTGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTCTTAGGAGCCGATAATGTTGTGATTGATATTCAGCAGATGAGCTCAGATGAACTGAACAATATCAGT
TATTTTGCCAATACTGCCGCTCAAAAAGATTATGATTTGTACAATGGCGGTTGGTCAGGAGACTATCAAGACCCATCCAC
TTATCTAGATACCTTGAATACTAAAAATGGTGGTAGTTTGCAGAACTTTGGCTTAGAACCAGGTCAAGAGAATGCTAAGA
TAAAGGCTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAGCGTTATGAA
AAATATGCTGAAGCACAAGCGTGGTTGATTGATAGTGCTTTGACAATGCCCAATCTCTCTCTTGGAGGGACACCGTCTGT
GACAAAGACTGTTCCGTTTAGTCGTTCTTACTCTCTGGTAGGGATTAAAGGTGGTTCAAGTAACTACTTTAAATATGTTA
AATTACAAGATAAAATTGTGACGACTAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCGTCTAAT
CAAAAAGCACAAGATGATTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.295

100

0.587
  amiA3 Streptococcus thermophilus LMD-9

57.534

100

0.58
  amiA3 Streptococcus thermophilus LMG 18311

57.382

100

0.578

Multiple sequence alignment