Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EL116_RS08190 Genome accession   NZ_LR134304
Coordinates   1669633..1670310 (-) Length   225 a.a.
NCBI ID   WP_047549148.1    Uniprot ID   -
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664633..1675310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS08170 (NCTC13712_01582) rpsT 1665543..1665794 (+) 252 WP_047428582.1 30S ribosomal protein S20 -
  EL116_RS08175 (NCTC13712_01583) holA 1665843..1666817 (-) 975 WP_047428579.1 DNA polymerase III subunit delta -
  EL116_RS08180 (NCTC13712_01584) comEC 1666898..1669075 (-) 2178 WP_047549150.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL116_RS08185 (NCTC13712_01585) - 1669080..1669541 (-) 462 WP_000439693.1 ComE operon protein 2 -
  EL116_RS08190 (NCTC13712_01586) comEA 1669633..1670310 (-) 678 WP_047549148.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL116_RS08195 (NCTC13712_01587) - 1670359..1671075 (-) 717 WP_047549145.1 class I SAM-dependent DNA methyltransferase -
  EL116_RS08200 (NCTC13712_01588) rsfS 1671078..1671431 (-) 354 WP_047448138.1 ribosome silencing factor -
  EL116_RS08205 (NCTC13712_01589) yqeK 1671432..1672016 (-) 585 WP_047530078.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  EL116_RS08210 (NCTC13712_01590) nadD 1672006..1672575 (-) 570 WP_047549143.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  EL116_RS08215 (NCTC13712_01591) yhbY 1672578..1672868 (-) 291 WP_047549141.1 ribosome assembly RNA-binding protein YhbY -
  EL116_RS08220 (NCTC13712_01592) aroE 1672873..1673679 (-) 807 WP_047549139.1 shikimate dehydrogenase -
  EL116_RS08225 (NCTC13712_01593) yqeH 1673692..1674792 (-) 1101 WP_047549136.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25550.10 Da        Isoelectric Point: 10.1124

>NTDB_id=1120784 EL116_RS08190 WP_047549148.1 1669633..1670310(-) (comEA) [Staphylococcus schweitzeri strain NCTC13712]
MYQFLLRYKNFFNQWKVYIISAIVSFVLLAGFIFWRQDHQLQNNKVNNNDASFKQLNTDNNDIKLVEGQNKDGDKRTKNK
GPVYVDVKGAIKHPNVYKMSSVDRVIDLLNKAELLEDADVSQINLSEKLTDQKMIYIPRKGQKNVESQLGTNKSQVGQSN
TNVKVNLNTASASELMSVPGVGQTKANAIIEHRNQQGAFQDIEELKKVKGFGSKTFEKLKSYFAI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1120784 EL116_RS08190 WP_047549148.1 1669633..1670310(-) (comEA) [Staphylococcus schweitzeri strain NCTC13712]
TTGTATCAATTTTTATTACGATATAAAAATTTTTTTAATCAATGGAAGGTCTACATTATAAGTGCTATAGTGTCATTTGT
TTTATTAGCAGGATTTATTTTCTGGCGACAAGATCATCAGTTACAAAATAATAAAGTTAATAATAATGATGCATCATTTA
AACAGCTTAATACTGATAATAACGATATTAAATTAGTTGAAGGTCAAAATAAAGATGGTGACAAACGCACTAAAAATAAA
GGGCCTGTATATGTAGATGTAAAGGGTGCTATTAAACATCCGAATGTTTATAAAATGTCATCTGTAGATAGAGTGATTGA
TTTACTAAATAAAGCAGAGTTGTTAGAAGATGCAGATGTAAGTCAAATTAATTTGTCCGAAAAATTAACAGATCAAAAAA
TGATTTATATTCCACGCAAAGGTCAAAAAAATGTTGAATCACAGCTTGGAACAAACAAATCACAAGTCGGTCAATCAAAT
ACCAATGTCAAAGTGAATTTAAATACAGCCTCAGCATCAGAGTTAATGTCAGTGCCAGGTGTGGGTCAAACTAAAGCGAA
CGCTATTATAGAGCATCGTAATCAGCAAGGTGCATTTCAAGATATTGAAGAGTTGAAGAAAGTGAAAGGTTTTGGCAGTA
AGACTTTCGAAAAATTGAAATCATATTTTGCAATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(162-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

70.925

100

0.716
  comEA Staphylococcus aureus N315

70.044

100

0.707
  comEA Latilactobacillus sakei subsp. sakei 23K

33.871

100

0.373

Multiple sequence alignment