Detailed information NTG1120740

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: EL200_RS21180
• Genome accession: NZ_LR134301
• Coordinates: 4557922..4559295 (-)
• Length: 457 a.a.
• NCBI ID: WP_049447478.1
• Uniprot ID: A0AA42XQJ5
• Organism: Stenotrophomonas maltophilia strain NCTC13014
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4552922..4564295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL200_RS21170 (NCTC13014_04218)	-	4553019..4556075 (+)	3057	WP_057499448.1	fused MFS/spermidine synthase	-
EL200_RS21175 (NCTC13014_04219)	pilB	4556089..4557816 (+)	1728	WP_057499447.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL200_RS21180 (NCTC13014_04220)	pilR	4557922..4559295 (-)	1374	WP_049447478.1	sigma-54 dependent transcriptional regulator	Regulator
EL200_RS21185 (NCTC13014_04221)	-	4559356..4560969 (-)	1614	WP_049447477.1	ATP-binding protein	-
EL200_RS21190 (NCTC13014_04222)	sucC	4561375..4562544 (+)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
EL200_RS21195 (NCTC13014_04223)	sucD	4562565..4563440 (+)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49489.81 Da
• Isoelectric Point: 6.3584

>NTDB_id=1120740 EL200_RS21180 WP_049447478.1 4557922..4559295(-) (pilR) [Stenotrophomonas maltophilia strain NCTC13014]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPVPGPAAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=1120740 EL200_RS21180 WP_049447478.1 4557922..4559295(-) (pilR) [Stenotrophomonas maltophilia strain NCTC13014]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACTGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTCGCCAGCAATCCGTACGATCTCTGCATCA
CCGACATGCGGCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
AGACATCTCGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACACCGAACGTCCCGTGCCCGGCCCTGCTG
CCGAACAAGGCGCACGCCTGCTGGGTGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTTGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGTGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCATGCCCAGGGCGCACG
TGCGGCCGGACCGTTCATACCGGTCAACTGCGGCGCCATTCCCGGCGAACTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGAGCGGTTGGTGCGGC
CAATGAGGAGCCGGTGGACGTACGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGATGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCCGCCGCGGTACTGGCACGCCTGGCCCGCAGCCACGGCCGTGCTACCCCGCTGCTGGCGCCTTCGGCGCTGGAGGC
ACTGGCGCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCGCCGGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACTGCTGCGCAGCTGGGGATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.377	99.781	0.632
pilR	Acinetobacter baumannii strain A118	48.596	100	0.492