Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HPYLSS1_RS03505 Genome accession   NZ_CP009259
Coordinates   707205..707756 (+) Length   183 a.a.
NCBI ID   WP_077232050.1    Uniprot ID   -
Organism   Helicobacter pylori SS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 702205..712756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLSS1_RS03490 (HPYLSS1_00675) cysS 702385..703782 (-) 1398 WP_077232047.1 cysteine--tRNA ligase -
  HPYLSS1_RS03495 (HPYLSS1_00676) murJ 703783..705243 (-) 1461 WP_077232048.1 murein biosynthesis integral membrane protein MurJ -
  HPYLSS1_RS03500 (HPYLSS1_00677) - 705336..707180 (+) 1845 WP_077232049.1 FapA family protein -
  HPYLSS1_RS03505 (HPYLSS1_00678) ruvA 707205..707756 (+) 552 WP_077232050.1 Holliday junction branch migration protein RuvA Machinery gene
  HPYLSS1_RS03510 - 707784..710521 (+) 2738 Protein_667 DUF3519 domain-containing protein -
  HPYLSS1_RS03515 (HPYLSS1_01057) - 710523..711239 (+) 717 WP_077232299.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20203.81 Da        Isoelectric Point: 9.4495

>NTDB_id=112071 HPYLSS1_RS03505 WP_077232050.1 707205..707756(+) (ruvA) [Helicobacter pylori SS1]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQAGQKARLKILQVIKEDAHLLYGFLEEGEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINQV
LKTLKPNLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=112071 HPYLSS1_RS03505 WP_077232050.1 707205..707756(+) (ruvA) [Helicobacter pylori SS1]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAGATCTTACAAGTGATTAAAG
AAGACGCGCATCTTTTATACGGGTTTTTAGAAGAGGGCGAAAAAATCCTTTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACCAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATTGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCACGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAACCAAGTC
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAGCAGCGATTAAAGAAGCCCTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

97.814

100

0.978
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361