Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL114_RS00280 Genome accession   NZ_LR134297
Coordinates   61525..62037 (-) Length   170 a.a.
NCBI ID   WP_010720497.1    Uniprot ID   A0A1V8XB86
Organism   Enterococcus hirae strain NCTC12368     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 56525..67037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL114_RS00260 (NCTC12368_00058) - 56545..58518 (-) 1974 WP_034697669.1 DHH family phosphoesterase -
  EL114_RS00265 (NCTC12368_00059) - 58899..60482 (-) 1584 WP_126342767.1 leucine-rich repeat domain-containing protein -
  EL114_RS00270 - 60631..60954 (-) 324 Protein_57 ISL3 family transposase -
  EL114_RS00275 (NCTC12368_00060) rpsR 61263..61499 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  EL114_RS00280 (NCTC12368_00061) ssb 61525..62037 (-) 513 WP_010720497.1 single-stranded DNA-binding protein Machinery gene
  EL114_RS00285 (NCTC12368_00062) rpsF 62089..62388 (-) 300 WP_010720498.1 30S ribosomal protein S6 -
  EL114_RS00290 (NCTC12368_00063) gyrA 62788..65286 (-) 2499 WP_010720499.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18703.22 Da        Isoelectric Point: 4.5567

>NTDB_id=1120644 EL114_RS00280 WP_010720497.1 61525..62037(-) (ssb) [Enterococcus hirae strain NCTC12368]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRAASENRQQTGGYQSSGQSTNDFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1120644 EL114_RS00280 WP_010720497.1 61525..62037(-) (ssb) [Enterococcus hirae strain NCTC12368]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACTAAAGATCCGGATTTACGATATACATCAAGTGGCACTGCAGTAGC
AACGTTTACTTTAGCTGTTAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATTAATTGTGTGATTT
GGCGTAAATCAGCAGAGACATTAGCAAACTATGCTCGTAAGGGGACTCTTTTAGGAGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGTGC
TGCATCTGAAAATCGTCAACAAACTGGCGGTTACCAAAGCTCTGGTCAATCGACAAATGATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGTTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment