Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   EL084_RS06010 Genome accession   NZ_LR134292
Coordinates   1231538..1232542 (-) Length   334 a.a.
NCBI ID   WP_126440499.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1232679..1233632 1231538..1232542 flank 137


Gene organization within MGE regions


Location: 1231538..1233632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS06010 (NCTC10389_01275) ccpA 1231538..1232542 (-) 1005 WP_126440499.1 catabolite control protein A Regulator
  EL084_RS06015 (NCTC10389_01276) - 1232679..1233632 (-) 954 WP_126440501.1 IS30 family transposase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36713.70 Da        Isoelectric Point: 5.1441

>NTDB_id=1120450 EL084_RS06010 WP_126440499.1 1231538..1232542(-) (ccpA) [Streptococcus equinus strain NCTC10389]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPVVLAGTVDLEHQLPS
VNIDYKAAVADVVDILAKNNKDIAFVSGPLIDEINGKVRLAGYKEGLENNNLSFKEGLVFEANYNYKDGYELAQRVMNSG
ATAAYVAEDELAAGLLNGLFAAGKKVPEDFEIITSNDSPITSYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
ILNHGLKLRGTSRQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1120450 EL084_RS06010 WP_126440499.1 1231538..1232542(-) (ccpA) [Streptococcus equinus strain NCTC10389]
ATGAACACTGATGATACGATTACAATTTATGACGTTGCACGTGAAGCTGGCGTCTCAATGGCAACAGTTAGTCGTGTTGT
AAATGGTAATAAAAATGTAAAGGAAAACACTCGTAAAAAAGTCCTTGAAGTTATTGACCGTTTAGACTATCGTCCAAATG
CAGTTGCTCGTGGTTTGGCAAGTAAGAAAACGACAACTGTTGGTGTTGTTATTCCAAATATCGCTAATAGCTATTTTTCA
ATTTTAGCGAGAGGGATTGATGACATTGCTGCTATGTACAAATACAATATCGTTCTTGCATCAAGTGATGAAGATGACGA
TAAAGAAGTTAATGTCGTAAACACTTTGTTTGCTAAACAAGTTGATGGTATTATCTTCATGGGTCACCATTTGACTGAAA
AAATTCGTGCAGAGTTCTCTCGCTCACGCACACCAGTTGTTCTAGCAGGGACAGTTGATTTAGAACATCAACTTCCAAGT
GTTAATATTGATTACAAAGCTGCTGTAGCAGATGTTGTTGATATTTTAGCTAAAAACAATAAAGATATTGCCTTTGTTTC
AGGACCACTTATTGACGAAATCAATGGTAAAGTTCGTCTTGCTGGTTACAAAGAAGGACTTGAAAATAACAATCTTTCAT
TCAAAGAAGGACTTGTATTTGAAGCAAACTATAACTACAAAGATGGTTATGAGCTTGCTCAACGTGTGATGAACTCAGGT
GCAACAGCTGCTTATGTAGCTGAAGATGAATTAGCTGCAGGTCTTTTGAATGGCTTGTTTGCTGCAGGTAAAAAAGTTCC
TGAAGACTTTGAAATCATTACAAGTAATGATTCACCAATTACTTCATACACACGTCCAAACCTCAGCTCAATCAGTCAAC
CGGTTTATGACCTTGGAGCTGTCAGCATGCGTATGTTGACTAAAATCATGAACAAAGAAGAACTTGAAGAAAAAGAAATC
ATTCTTAATCATGGTCTTAAATTACGTGGTACATCACGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.042

100

0.79
  ccpA Streptococcus pneumoniae D39

76.048

100

0.76
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.495

99.102

0.56

Multiple sequence alignment