Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL087_RS01580 Genome accession   NZ_LR134288
Coordinates   310729..312687 (+) Length   652 a.a.
NCBI ID   WP_126406426.1    Uniprot ID   A0A4U9Y9T8
Organism   Streptococcus milleri strain NCTC11169     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 305729..317687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS01565 (NCTC11169_00313) ftsL 306636..306956 (+) 321 WP_003031041.1 cell division protein FtsL -
  EL087_RS01570 (NCTC11169_00314) pbp2X 306960..309218 (+) 2259 WP_126406420.1 penicillin-binding protein PBP2X -
  EL087_RS01575 (NCTC11169_00315) mraY 309220..310203 (+) 984 WP_126406423.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  EL087_RS01580 (NCTC11169_00316) amiA3 310729..312687 (+) 1959 WP_126406426.1 peptide ABC transporter substrate-binding protein Regulator
  EL087_RS01590 (NCTC11169_00318) - 313177..314058 (+) 882 WP_003025917.1 class II fructose-bisphosphate aldolase -
  EL087_RS01595 (NCTC11169_00319) - 314163..314624 (+) 462 WP_126406428.1 GNAT family N-acetyltransferase -
  EL087_RS01605 (NCTC11169_00321) - 314961..315407 (+) 447 WP_049514692.1 LytTR family DNA-binding domain-containing protein -
  EL087_RS01610 (NCTC11169_00322) - 315413..316075 (+) 663 WP_126406430.1 LiaF transmembrane domain-containing protein -
  EL087_RS01615 (NCTC11169_00323) rpmB 316210..316398 (+) 189 WP_003025909.1 50S ribosomal protein L28 -
  EL087_RS01620 (NCTC11169_00324) - 316574..316939 (+) 366 WP_003031118.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72465.69 Da        Isoelectric Point: 7.8773

>NTDB_id=1120242 EL087_RS01580 WP_126406426.1 310729..312687(+) (amiA3) [Streptococcus milleri strain NCTC11169]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLSRAETYWNSKTTNNILFPVNADFLKSQGKNFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKAATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLVD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGTENVVIDIQQMSSDELHNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENDKIKAVGLDTYTEMLAEANAETNETKRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGGSSSYFKYVKLQDKIVTTKEYESAKKKWLKEKETSN
KKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1120242 EL087_RS01580 WP_126406426.1 310729..312687(+) (amiA3) [Streptococcus milleri strain NCTC11169]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCGCTGGAATCCTATTATCAGGTTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGACACGCTAAATTATCTGATGGCGAACCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACGTAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCTCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
CTAGATGACTATACAGTACAGTATACACTCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAATTTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTGTTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGACAATATCAAATTGACATATTATGATGGTTCTGACCAAGAAGCCCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGTT
TGCAAGATGCGACCAGCTACTATTATAACTTTAATTTAAATCGTCAGTCTTACAACCATACATCTAAGAAAACAGATGCT
CAAAAGGCTGCGACCCAAGAAGCGGTGCTAAATAAAGCTTTCCGCCAAGCTATCAACTTTGCCTATAATCGTACTTCTTA
TGGTGCACAAAGTAATGGGAAAGACGGAGCGACAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCG
GTGATAAAACGTTTGGTGATGTTGTGTCTTCTAAATTGGTAAACTATGGTTCAGAATGGTCAAATATGAATTTGGTCGAT
GCACAAGATGCTTATTACAATCCAGAAAAAGCCAAGGCGAAGTTTGCTCAAGCTAAAGCAGAATTGCAAGCAAAAGGTGT
TCAGTTCCCTATTCACTTAGATGTACCGGCTGATCAGACAAGCAAAATTGGTGTTCAATGGGAAAGTTCCATGAAGCAAT
CTGTTGAGTCTGTCTTGGGCACAGAAAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTACATAATATCAGT
TATTTTGCTAATACAGCTGCTCAAAAGGACTATGATCTGTATAATGGTGGCTGGTCTGGTGACTATCAAGACCCATCTAC
TTATTTAGATACTTTGAATACAAAAAATGGTGGTAGTTTACAAAACTTTGGTCTGGAACCAGGTCAAGAAAATGATAAGA
TTAAGGCAGTTGGACTGGACACATATACAGAGATGCTAGCAGAAGCAAATGCTGAAACCAATGAAACGAAGCGCTATGAA
AAATATGCCGAAGCACAAGCGTGGTTAATTGATAGTGGCTTGACAATGCCAAACCTGTCTCTTGGGGGAACACCGTCTGT
AACGAAAACAGTTCCATTTAGTCGTTCTTATTCTCTAGTCGGCATTAAAGGTGGATCAAGCAGTTATTTTAAATATGTCA
AACTGCAAGACAAGATTGTAACAACAAAAGAATACGAAAGTGCCAAAAAGAAATGGCTAAAAGAAAAAGAAACCTCTAAT
AAAAAAGCACAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9Y9T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

57.382

100

0.578
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

57.23

100

0.577

Multiple sequence alignment