Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EL111_RS09815 Genome accession   NZ_LR134287
Coordinates   2112267..2113832 (-) Length   521 a.a.
NCBI ID   WP_123795113.1    Uniprot ID   A0A5P3MRL3
Organism   Neisseria animalis strain NCTC10212     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2107267..2118832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS09785 (NCTC10212_02017) mraZ 2107889..2108344 (-) 456 WP_123795156.1 division/cell wall cluster transcriptional repressor MraZ -
  EL111_RS09790 (NCTC10212_02018) - 2108717..2109868 (+) 1152 WP_123795111.1 class I SAM-dependent methyltransferase -
  EL111_RS09805 (NCTC10212_02021) - 2110557..2111846 (+) 1290 WP_123795112.1 AmpG family muropeptide MFS transporter -
  EL111_RS09815 (NCTC10212_02022) pilR 2112267..2113832 (-) 1566 WP_123795113.1 sigma-54-dependent transcriptional regulator Regulator
  EL111_RS09820 (NCTC10212_02023) - 2113825..2115411 (-) 1587 WP_123795114.1 ATP-binding protein -
  EL111_RS09825 (NCTC10212_02024) parC 2115984..2118290 (-) 2307 WP_123795115.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 57631.62 Da        Isoelectric Point: 4.8153

>NTDB_id=1120223 EL111_RS09815 WP_123795113.1 2112267..2113832(-) (pilR) [Neisseria animalis strain NCTC10212]
MSRLQQPVLVVDDEADIRDLMEMTLMKMGLQVDTAVGVEEAKSKLAGNRYSLVLTDMRMPDGSGLEVVQYLNELMLDTPI
AVITAFGNADQAVEALKAGAFDYLQKPITLSQLRSLVKSAISVNENNETAPPRAPAEPSAPQPAAETPPQNTMPLFADGM
VQEKNDVPSEPESIAGKPQVGGEADMPRLLGGSPQMVEARHLIRRLAGSNVPVYIAGESGTGKEQAARTIHELSERAGKP
FVAVNCGAIPENLMESEFFGYKKGSFTGADQDRSGFFQYADGGTLFLDEVADLPLAMQVKLLRAIQEKAVRRIGDAQETA
VDVRIICATHKNLEALVESGAFRQDLYYRLNVVSVQMPPLREMREDMDALITYLLHKHCKNRRYTLSPKAQDALRHYSYP
GNFRELENILERAVALAVGDVIQLDDLQIQMPSAHSADRQSESETAERPSLVCTAESVASAGCLQAFDPRTMQIQDYLDE
VERDIIRQILQQTRYNRTQAAKLLGISFRSMRYRMERLGIE

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1120223 EL111_RS09815 WP_123795113.1 2112267..2113832(-) (pilR) [Neisseria animalis strain NCTC10212]
ATGAGTAGATTGCAACAGCCGGTATTGGTGGTAGACGACGAAGCGGATATCCGCGACCTGATGGAAATGACCCTGATGAA
AATGGGTTTGCAAGTCGATACGGCCGTCGGCGTAGAAGAAGCCAAAAGTAAGCTGGCAGGCAACCGTTATTCGCTGGTGC
TGACCGATATGCGTATGCCCGACGGTTCGGGCTTGGAAGTCGTGCAGTATTTGAACGAATTGATGCTGGATACGCCGATT
GCCGTGATTACCGCGTTCGGCAATGCCGATCAGGCAGTAGAAGCTTTGAAAGCCGGCGCGTTCGACTACCTGCAAAAACC
GATAACCCTTTCCCAACTGCGCTCGCTGGTCAAATCTGCCATCAGCGTTAATGAAAACAACGAAACCGCACCGCCGCGCG
CGCCGGCAGAGCCGTCTGCACCTCAACCCGCAGCAGAAACGCCGCCGCAGAATACCATGCCGTTGTTTGCAGACGGCATG
GTTCAGGAAAAAAACGATGTGCCGTCCGAACCGGAAAGCATTGCCGGCAAGCCGCAAGTCGGCGGAGAAGCGGATATGCC
CAGATTGTTGGGCGGTTCTCCGCAGATGGTGGAAGCCCGCCATTTAATCCGGCGTTTGGCAGGCAGCAATGTTCCCGTTT
ATATCGCAGGCGAATCGGGTACGGGCAAAGAGCAGGCGGCGCGAACCATACACGAGCTGTCCGAACGCGCAGGCAAGCCG
TTTGTTGCCGTCAACTGCGGTGCGATTCCCGAAAATCTGATGGAAAGCGAGTTTTTCGGTTATAAAAAAGGCAGCTTTAC
CGGAGCCGATCAAGACCGCAGCGGTTTTTTCCAATATGCAGACGGCGGCACGCTGTTTTTGGACGAAGTGGCCGATTTGC
CGCTGGCCATGCAGGTTAAATTGTTGCGCGCCATTCAGGAAAAAGCCGTCCGCCGTATTGGTGATGCACAGGAAACCGCT
GTCGATGTGCGGATTATCTGCGCCACCCATAAAAATCTTGAAGCCTTGGTGGAAAGCGGCGCATTCCGTCAAGACCTGTA
TTACCGCTTGAATGTCGTGTCCGTCCAAATGCCGCCGTTGCGCGAAATGCGCGAAGACATGGACGCGTTGATTACCTACC
TGCTGCATAAACATTGTAAGAACCGCCGTTATACGCTTAGCCCGAAAGCGCAGGACGCGTTGCGGCATTACAGCTATCCG
GGCAATTTCCGCGAGCTGGAAAATATTTTGGAACGCGCCGTTGCTTTGGCGGTGGGAGATGTGATTCAGTTGGACGATTT
GCAAATCCAAATGCCGTCTGCACATTCTGCAGACCGACAGTCGGAATCGGAAACCGCAGAGCGGCCGTCGTTGGTTTGTA
CGGCAGAAAGCGTGGCTTCGGCAGGCTGTTTGCAGGCTTTTGATCCGCGTACCATGCAGATACAGGATTATTTGGACGAG
GTGGAGCGCGATATTATCCGCCAAATATTGCAACAAACGCGCTATAACCGCACACAGGCAGCCAAGCTGTTGGGCATCAG
TTTCCGCTCCATGCGTTACCGTATGGAACGCTTGGGCATTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(478-517)

Sigma-54 interaction domain (Sigma54_activat)

(190-355)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MRL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

48.282

100

0.486
  pilR Acinetobacter baumannii strain A118

40.341

100

0.409

Multiple sequence alignment