Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   EL111_RS02350 Genome accession   NZ_LR134287
Coordinates   496201..496917 (+) Length   238 a.a.
NCBI ID   WP_123795564.1    Uniprot ID   A0A5P3MRZ5
Organism   Neisseria animalis strain NCTC10212     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 491201..501917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL111_RS02330 (NCTC10212_00483) - 492140..493003 (-) 864 WP_123795611.1 hypothetical protein -
  EL111_RS02335 (NCTC10212_00484) - 493238..494836 (+) 1599 WP_123795610.1 peptide chain release factor 3 -
  EL111_RS02340 (NCTC10212_00485) - 494976..495539 (+) 564 WP_126325829.1 biotin transporter BioY -
  EL111_RS02345 (NCTC10212_00486) - 495625..496053 (+) 429 WP_123795565.1 hypothetical protein -
  EL111_RS02350 (NCTC10212_00487) dsbA1 496201..496917 (+) 717 WP_123795564.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EL111_RS02360 (NCTC10212_00488) - 497548..498936 (-) 1389 WP_123795563.1 TolC family protein -
  EL111_RS02365 (NCTC10212_00489) - 499031..500968 (-) 1938 WP_123795562.1 MacB family efflux pump subunit -

Sequence


Protein


Download         Length: 238 a.a.        Molecular weight: 25845.50 Da        Isoelectric Point: 4.8256

>NTDB_id=1120202 EL111_RS02350 WP_123795564.1 496201..496917(+) (dsbA1) [Neisseria animalis strain NCTC10212]
MKLKTTAVAAMTLLALAACGQKGETSVPAGDMPQNTSSAPIAAAQAPAAPQGLVEGQNYTVLANPIPQKQADKIEVLEFF
GYFCPHCAHLEPVISEHVKTFQDDTYLRTEHVVWQEDMMPLARLTAALDISGEKAKANSAVFAAMIDEKINLTDENTLKQ
WLEGQTAFDGKKVLAAYESPESAQLADKMAELTNVHQIASTPTVIVGGKYVVKFADWHSGMQTIDMLVDKVREEQKAQ

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1120202 EL111_RS02350 WP_123795564.1 496201..496917(+) (dsbA1) [Neisseria animalis strain NCTC10212]
ATGAAGTTGAAAACAACGGCTGTTGCCGCGATGACCCTGCTGGCACTGGCGGCCTGCGGTCAAAAAGGCGAAACCAGCGT
ACCGGCCGGCGATATGCCGCAAAATACTTCTTCCGCACCGATTGCTGCCGCGCAAGCTCCGGCTGCGCCGCAAGGCTTGG
TGGAAGGCCAAAACTATACCGTATTGGCCAACCCGATTCCGCAAAAACAGGCGGACAAAATCGAAGTATTGGAATTTTTC
GGCTATTTCTGCCCGCATTGCGCCCATTTGGAGCCGGTAATCAGCGAGCATGTGAAAACTTTCCAAGATGATACTTACCT
GCGTACCGAACACGTTGTGTGGCAGGAAGACATGATGCCGTTGGCACGCCTGACCGCCGCGCTGGACATCAGCGGTGAAA
AAGCCAAGGCCAACAGCGCGGTTTTTGCGGCGATGATTGACGAAAAAATCAATCTGACCGATGAAAATACGCTGAAACAA
TGGCTGGAAGGCCAAACCGCATTTGACGGTAAAAAAGTATTGGCGGCATACGAATCTCCGGAAAGCGCGCAACTTGCCGA
TAAAATGGCGGAATTGACCAATGTGCACCAAATTGCCAGCACGCCTACCGTCATCGTCGGCGGCAAATATGTGGTGAAAT
TTGCCGATTGGCATTCCGGTATGCAAACCATCGATATGTTGGTGGACAAAGTACGCGAAGAGCAAAAGGCACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5P3MRZ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

64.435

100

0.647

  dsbA2 Neisseria meningitidis MC58

71.739

77.311

0.555


Multiple sequence alignment