Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL100_RS07080 Genome accession   NZ_LR134285
Coordinates   1467661..1469661 (+) Length   666 a.a.
NCBI ID   WP_126404470.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462661..1474661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS07055 (NCTC3168_01449) trpD 1463228..1464232 (+) 1005 WP_126404475.1 anthranilate phosphoribosyltransferase -
  EL100_RS07060 (NCTC3168_01450) trpC 1464229..1464996 (+) 768 WP_126404474.1 indole-3-glycerol phosphate synthase TrpC -
  EL100_RS07065 (NCTC3168_01451) - 1464983..1465564 (+) 582 WP_126404473.1 phosphoribosylanthranilate isomerase -
  EL100_RS07070 (NCTC3168_01452) trpB 1465561..1466763 (+) 1203 WP_126404472.1 tryptophan synthase subunit beta -
  EL100_RS07075 (NCTC3168_01453) trpA 1466766..1467551 (+) 786 WP_126404471.1 tryptophan synthase subunit alpha -
  EL100_RS07080 (NCTC3168_01454) amiA3 1467661..1469661 (+) 2001 WP_126404470.1 peptide ABC transporter substrate-binding protein Regulator
  EL100_RS07085 (NCTC3168_01455) - 1469776..1472844 (+) 3069 WP_126404469.1 CocE/NonD family hydrolase -
  EL100_RS07090 (NCTC3168_01456) trxA 1472938..1473252 (+) 315 WP_006595996.1 thioredoxin -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74095.37 Da        Isoelectric Point: 4.6860

>NTDB_id=1120186 EL100_RS07080 WP_126404470.1 1467661..1469661(+) (amiA3) [Streptococcus australis strain NCTC3168]
MKKRNVIALAGVALLSAGILAACSGGSKPSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTAEDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTAKTTDEEKSSTKKALLNKDFRQAISFAFDRESYAAQANGKDGASKLIRNLYIPPTFVQADGKTFGEMVKTELVTY
GDEWKDANLDDGQNGLYNEKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVT
EAGAETKDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKDHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=1120186 EL100_RS07080 WP_126404470.1 1467661..1469661(+) (amiA3) [Streptococcus australis strain NCTC3168]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCCGGTGGTTC
TAAACCATCAAGCTCAAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCTTACGTTTACGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCATGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGGAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCCAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGAAGACTTCGTTGCAGGGATCAAGTATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAACTCTATCAAGGGCTTGAATGATTATGTTGAAGGTAAGACT
TCAGACTTCTCAAATGTAGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAAGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACTTTCCCTATCAACGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACTAGCTCTCTTCTTTACAATGGTCCATACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAGGACAATGTTCACATCACAGATGTTAAGCTCGAGTACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCGTTTGAGGACAATGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACAGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACACCTCAAGATGCCAGCACATTCGTTATCGGTGTGAATATCGACCGTCAG
TCTTACAAGTACACTGCAAAAACAACAGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCAATCAGCTTTGCCTTTGACCGTGAATCTTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGCAAGACCTTCGGTGAGATGGTTAAAACTGAGTTGGTTACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAGAATGGTCTTTACAACGAAAAACAAGCTAAAGAAGAGTTTGC
AAAAGCAAAATCTGCACTTGAAGCAGACGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCTTTCAAACAATCGGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTGACGCTCTTTGCTGCTAAAGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAATACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAATGAGGCAGCTAAGAAAGTTGGTCTCTACGACTTTGAGAAGATGGTAACG
GAAGCAGGAGCTGAAACCAAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGC
TTTGGTTATCCCAACAACATCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTCTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGCATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAGATCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.522

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.222

100

0.563

Multiple sequence alignment