Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL100_RS05435 Genome accession   NZ_LR134285
Coordinates   1121569..1122063 (+) Length   164 a.a.
NCBI ID   WP_126404770.1    Uniprot ID   -
Organism   Streptococcus australis strain NCTC3168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1116569..1127063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS05415 (NCTC3168_01117) - 1118644..1119051 (-) 408 WP_126405071.1 hypothetical protein -
  EL100_RS05420 (NCTC3168_01118) - 1119032..1119934 (-) 903 WP_126404772.1 phosphodiester glycosidase family protein -
  EL100_RS05425 (NCTC3168_01119) - 1119921..1120973 (-) 1053 WP_126404771.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  EL100_RS05430 (NCTC3168_01120) rpsF 1121252..1121542 (+) 291 WP_006595679.1 30S ribosomal protein S6 -
  EL100_RS05435 (NCTC3168_01121) ssb 1121569..1122063 (+) 495 WP_126404770.1 single-stranded DNA-binding protein Machinery gene
  EL100_RS05440 (NCTC3168_01122) rpsR 1122105..1122344 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL100_RS05445 (NCTC3168_01123) - 1122656..1123177 (+) 522 WP_126404769.1 GNAT family N-acetyltransferase -
  EL100_RS05450 (NCTC3168_01124) - 1123212..1123886 (-) 675 WP_126404768.1 DUF1129 family protein -
  EL100_RS05455 (NCTC3168_01125) - 1123915..1124859 (-) 945 WP_126404767.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17851.56 Da        Isoelectric Point: 4.7079

>NTDB_id=1120178 EL100_RS05435 WP_126404770.1 1121569..1122063(+) (ssb) [Streptococcus australis strain NCTC3168]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYSSGGGFAGNAAPSFGGSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1120178 EL100_RS05435 WP_126404770.1 1121569..1122063(+) (ssb) [Streptococcus australis strain NCTC3168]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAACCAGGCTGTTGC
GACATTTTCACTTGCTGTTAACCGTAATTTTAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTGTTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCTGGTGGAGGTTATTCTTCAGGTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGGAT
CTGAACCATCGAACGCAACACCAAACTTTGGACGTGATGACAATCCATTTGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.195

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.622
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.542

71.951

0.378

Multiple sequence alignment