Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL078_RS07975 Genome accession   NZ_LR134282
Coordinates   1593617..1594123 (-) Length   168 a.a.
NCBI ID   WP_074533509.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1588617..1599123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS07960 (NCTC8140_01613) - 1591286..1592230 (+) 945 WP_024343577.1 magnesium transporter CorA family protein -
  EL078_RS07965 (NCTC8140_01614) - 1592554..1593210 (+) 657 WP_021143092.1 DUF1129 domain-containing protein -
  EL078_RS07970 (NCTC8140_01615) rpsR 1593318..1593557 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL078_RS07975 (NCTC8140_01616) ssb 1593617..1594123 (-) 507 WP_074533509.1 single-stranded DNA-binding protein Machinery gene
  EL078_RS07980 (NCTC8140_01617) rpsF 1594135..1594425 (-) 291 WP_004233201.1 30S ribosomal protein S6 -
  EL078_RS07985 (NCTC8140_01618) - 1594634..1594798 (-) 165 WP_021143095.1 hypothetical protein -
  EL078_RS07990 (NCTC8140_01619) - 1594972..1595910 (-) 939 WP_024343574.1 class C sortase -
  EL078_RS07995 (NCTC8140_01620) - 1596007..1597386 (-) 1380 WP_126438096.1 SpaA isopeptide-forming pilin-related protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18600.26 Da        Isoelectric Point: 4.9008

>NTDB_id=1119993 EL078_RS07975 WP_074533509.1 1593617..1594123(-) (ssb) [Streptococcus equinus strain NCTC8140]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADSFQILESRATREGQSGGSYNGGFNNNSSFGGSSNSGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1119993 EL078_RS07975 WP_074533509.1 1593617..1594123(-) (ssb) [Streptococcus equinus strain NCTC8140]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAACCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGTCAGCAAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTACATTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAGCGCGTTTACGTAACTGAGATTGTTGCAGATAGCTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGACAATCTGGTGGTTCTTACAATGGTGGATTCAATAACAATTCATCATTTGGCGGATCTTCAAACAGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAATTTCGGTCGTGATGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.85

100

0.637
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.659

100

0.625
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

64.881

0.363

Multiple sequence alignment