Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL076_RS08575 Genome accession   NZ_LR134275
Coordinates   1706960..1707478 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus vestibularis strain NCTC12167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1701960..1712478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL076_RS08555 (NCTC12167_01687) - 1703872..1704816 (+) 945 WP_037611177.1 magnesium transporter CorA family protein -
  EL076_RS08560 (NCTC12167_01688) - 1704886..1705557 (+) 672 WP_126430041.1 DUF1129 domain-containing protein -
  EL076_RS08565 (NCTC12167_01689) - 1705674..1706564 (+) 891 WP_126430043.1 DUF4300 family protein -
  EL076_RS08570 (NCTC12167_01690) rpsR 1706679..1706918 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  EL076_RS08575 (NCTC12167_01691) ssb 1706960..1707478 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  EL076_RS08580 (NCTC12167_01692) rpsF 1707490..1707780 (-) 291 WP_003093185.1 30S ribosomal protein S6 -
  EL076_RS08585 (NCTC12167_01693) - 1707984..1708937 (+) 954 WP_048787884.1 hypothetical protein -
  EL076_RS08590 (NCTC12167_01694) mutY 1710136..1711287 (+) 1152 WP_048787885.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1119908 EL076_RS08575 WP_002891844.1 1706960..1707478(-) (ssb) [Streptococcus vestibularis strain NCTC12167]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1119908 EL076_RS08575 WP_002891844.1 1706960..1707478(-) (ssb) [Streptococcus vestibularis strain NCTC12167]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAGGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment