Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LOA_RS03705 Genome accession   NZ_CP004006
Coordinates   745969..746682 (-) Length   237 a.a.
NCBI ID   WP_237757968.1    Uniprot ID   -
Organism   Legionella oakridgensis ATCC 33761 = DSM 21215     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740969..751682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOA_RS03680 (Loa_00818) - 741683..741958 (+) 276 WP_025385188.1 hypothetical protein -
  LOA_RS03685 (Loa_00819) - 741975..743051 (+) 1077 WP_025385189.1 M50 family metallopeptidase -
  LOA_RS03690 (Loa_00820) - 743125..744066 (-) 942 WP_025385190.1 hypothetical protein -
  LOA_RS03695 (Loa_00821) - 744274..745371 (+) 1098 WP_025385058.1 IS4 family transposase -
  LOA_RS03700 (Loa_00822) - 745460..745888 (+) 429 WP_025385191.1 hypothetical protein -
  LOA_RS03705 (Loa_00823) comFC 745969..746682 (-) 714 WP_237757968.1 ComF family protein Machinery gene
  LOA_RS03710 (Loa_00824) bioC 746786..747655 (+) 870 WP_025385193.1 malonyl-ACP O-methyltransferase BioC -
  LOA_RS03715 (Loa_00825) phhA 747692..748510 (+) 819 WP_025385194.1 phenylalanine 4-monooxygenase -
  LOA_RS03720 (Loa_00826) letA 748665..749324 (+) 660 WP_025385195.1 two-component system response regulator LetA Regulator
  LOA_RS03725 (Loa_00827) uvrC 749661..751502 (+) 1842 WP_025385196.1 excinuclease ABC subunit UvrC -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27000.60 Da        Isoelectric Point: 9.3201

>NTDB_id=111990 LOA_RS03705 WP_237757968.1 745969..746682(-) (comFC) [Legionella oakridgensis ATCC 33761 = DSM 21215]
MDLTRLRQKTKSIAQILRLPSICALCNQYHQGLETICKTCTELFIPLGFTCRICAIPLPDDKFLVCGQCIRKKPLFDRVF
ASYRFEEPLRTLLHEFKYREGLYLNSFIANLMLRTPPDLNNTQCLVPVPMHPGRLRDRGYNQANELAKYLAVRLKMPYEP
LLCKKIRNTAPQAGLNGKQRQQNLRGSFTTNTSPYHHITLVDDLLTTGSTANELAGTLKKQGIVQVDVWCCARAISE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=111990 LOA_RS03705 WP_237757968.1 745969..746682(-) (comFC) [Legionella oakridgensis ATCC 33761 = DSM 21215]
ATGGATTTAACACGCCTGCGTCAAAAAACAAAAAGTATAGCACAAATACTGAGACTGCCTTCTATATGTGCATTATGTAA
TCAGTATCATCAAGGACTTGAAACAATCTGCAAGACATGCACAGAACTTTTTATCCCTTTAGGCTTTACCTGCCGCATAT
GTGCTATACCATTGCCAGATGATAAGTTTTTAGTTTGTGGGCAATGCATACGAAAAAAACCCCTATTCGATCGGGTGTTT
GCCAGCTATCGTTTTGAGGAACCATTACGTACGCTGCTGCATGAATTTAAATATCGTGAAGGGCTTTATTTAAATTCTTT
TATTGCCAATTTAATGTTAAGGACCCCCCCTGATCTGAATAATACTCAATGCTTGGTGCCTGTCCCCATGCATCCAGGAC
GATTGCGTGACAGAGGATATAATCAGGCAAACGAACTCGCCAAATATTTAGCGGTCCGTTTAAAGATGCCTTATGAACCA
TTACTCTGTAAAAAAATACGAAATACAGCACCTCAAGCCGGTCTAAATGGCAAACAAAGACAACAAAATTTACGTGGCTC
TTTTACAACGAATACCAGTCCCTACCATCACATCACCCTAGTAGATGATTTACTAACAACAGGCAGCACAGCCAATGAAC
TAGCGGGGACTTTAAAAAAACAAGGAATAGTTCAGGTGGATGTCTGGTGTTGCGCCAGAGCAATATCGGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

54.545

97.468

0.532
  comFC Legionella pneumophila strain ERS1305867

55.208

81.013

0.447

Multiple sequence alignment