Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EL086_RS08310 Genome accession   NZ_LR134274
Coordinates   1808624..1809658 (-) Length   344 a.a.
NCBI ID   WP_371212501.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC8618     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1803624..1814658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL086_RS08285 (NCTC8618_04086) - 1804981..1806162 (+) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -
  EL086_RS08290 (NCTC8618_04087) tnpA 1806327..1806800 (-) 474 Protein_1591 IS200/IS605 family transposase -
  EL086_RS08300 (NCTC8618_04089) trmB 1807124..1807765 (-) 642 WP_038676644.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  EL086_RS08305 (NCTC8618_04090) ccrZ 1807775..1808566 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  EL086_RS08310 (NCTC8618_04091) pptB 1808624..1809658 (-) 1035 WP_371212501.1 ABC transporter permease Regulator
  EL086_RS08315 (NCTC8618_04092) pptA 1809658..1810389 (-) 732 WP_038676648.1 ABC transporter ATP-binding protein Regulator
  EL086_RS08320 (NCTC8618_04093) - 1810454..1810873 (+) 420 WP_002891660.1 HIT family protein -
  EL086_RS08325 (NCTC8618_04094) - 1810870..1811169 (+) 300 WP_002884229.1 hypothetical protein -
  EL086_RS10450 (NCTC8618_04095) - 1811349..1811516 (-) 168 WP_002884708.1 hypothetical protein -
  EL086_RS10500 (NCTC8618_04096) - 1811534..1811998 (-) 465 WP_172855709.1 hypothetical protein -
  EL086_RS08335 (NCTC8618_04097) - 1812092..1812700 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  EL086_RS10665 (NCTC8618_04098) - 1812718..1812843 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39866.28 Da        Isoelectric Point: 10.5540

>NTDB_id=1119838 EL086_RS08310 WP_371212501.1 1808624..1809658(-) (pptB) [Streptococcus salivarius strain NCTC8618]
MAELFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLMLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLGHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWAEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVLFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKFS
LILVGMMLVLSLVYLPSKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1119838 EL086_RS08310 WP_371212501.1 1808624..1809658(-) (pptB) [Streptococcus salivarius strain NCTC8618]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTCCTCTTTCTTTTAGGTTTCGTCTTGGTGCAGTATAGCCAATTGCTGAAACATTTTCCCAAGAATC
CATGGGCAATCATTCTTGGCTTGCTTATGCTTTGTCTGTTATTGCCTTTTTGGGGGAATATTGCGACTTATTTAGAACCT
GCGGACAAGCACTACCTCTTGGTGAAGGAAGAAGAGGTGCTAGGCCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TTCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCCCAACCTTTTTATAAGCAGTCTGGC
CTGAATTGGGCTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTTTTTACCAATGT
TAAGGGAATTACGTCGAGTGTTAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTATCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTAACA
CTTCTGGTTCTCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAATCTTATGCCAGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTTAGT
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCATCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

95.058

100

0.951

  pptB Streptococcus thermophilus LMD-9

91.57

100

0.916


Multiple sequence alignment