Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL086_RS05000 Genome accession   NZ_LR134274
Coordinates   1010587..1011396 (+) Length   269 a.a.
NCBI ID   WP_126405093.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC8618     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005587..1016396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL086_RS04975 (NCTC8618_03417) - 1005912..1006610 (-) 699 WP_002886251.1 amino acid ABC transporter permease -
  EL086_RS04980 (NCTC8618_03418) - 1006628..1007461 (-) 834 WP_037611665.1 transporter substrate-binding domain-containing protein -
  EL086_RS04985 (NCTC8618_03419) - 1007471..1008238 (-) 768 WP_038675884.1 amino acid ABC transporter ATP-binding protein -
  EL086_RS04990 (NCTC8618_03420) vicR 1008538..1009245 (+) 708 WP_002884978.1 response regulator YycF Regulator
  EL086_RS04995 (NCTC8618_03421) vicK 1009238..1010581 (+) 1344 WP_038675887.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL086_RS05000 (NCTC8618_03422) vicX 1010587..1011396 (+) 810 WP_126405093.1 MBL fold metallo-hydrolase Regulator
  EL086_RS05005 (NCTC8618_03423) - 1011455..1011814 (+) 360 WP_037611660.1 YbaN family protein -
  EL086_RS05010 (NCTC8618_03424) - 1011866..1013080 (-) 1215 WP_038675892.1 aminoacyltransferase -
  EL086_RS05015 (NCTC8618_03425) yidA 1013082..1013891 (-) 810 WP_002890845.1 sugar-phosphatase -
  EL086_RS05020 (NCTC8618_03426) - 1014069..1014935 (+) 867 WP_038675894.1 GNAT family N-acetyltransferase -
  EL086_RS05025 (NCTC8618_03427) - 1015018..1015404 (+) 387 WP_002884910.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30007.86 Da        Isoelectric Point: 5.3499

>NTDB_id=1119822 EL086_RS05000 WP_126405093.1 1010587..1011396(+) (vicX) [Streptococcus salivarius strain NCTC8618]
MSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDLDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTMEN
QLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1119822 EL086_RS05000 WP_126405093.1 1010587..1011396(+) (vicX) [Streptococcus salivarius strain NCTC8618]
ATCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGAGAA
GAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGACCCGAGTGATT
TGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGCGTAGGCGTTTTAGCTCGTAAATATGGCATGGAT
ATCTACGCCAACGAGAAAACCTGGCAGATTATGGATAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACATGT
TTTTTCTCGTGACAAGCTTCTGACCTTTGGAGACCTTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATCCAC
AGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTTGTCATGTTAACGGATACGGGTTATGTTTCTGATCGTATGGCAGGT
ATTATTGAGAATGCCGACGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATCTACTTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAAAAT
CAGTTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTTAAAGTTTATGATACCTCACCAGACACAGCGACTCCACTGAC
AGACATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77

Multiple sequence alignment