Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL085_RS11890 Genome accession   NZ_LR134267
Coordinates   2530406..2530912 (-) Length   168 a.a.
NCBI ID   WP_126511043.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain NCTC5661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2525406..2535912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL085_RS11875 (SAMEA3504576_02440) - 2526623..2528614 (+) 1992 WP_014614918.1 catalase -
  EL085_RS11880 (SAMEA3504576_02441) - 2528828..2529919 (-) 1092 WP_126511042.1 Abi family protein -
  EL085_RS11885 (SAMEA3504576_02442) rpsR 2530110..2530352 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  EL085_RS11890 (SAMEA3504576_02443) ssbA 2530406..2530912 (-) 507 WP_126511043.1 single-stranded DNA-binding protein Machinery gene
  EL085_RS11895 (SAMEA3504576_02444) rpsF 2530935..2531231 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  EL085_RS11900 (SAMEA3504576_02445) sbi 2531568..2533094 (+) 1527 WP_096533325.1 Ig-binding surface protein Sbi/SpsK -
  EL085_RS11905 (SAMEA3504576_02446) - 2533148..2533957 (-) 810 WP_096533324.1 ABC transporter permease subunit -
  EL085_RS11910 (SAMEA3504576_02447) - 2533950..2534720 (-) 771 WP_126511044.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18765.44 Da        Isoelectric Point: 5.1957

>NTDB_id=1119628 EL085_RS11890 WP_126511043.1 2530406..2530912(-) (ssbA) [Staphylococcus pseudintermedius strain NCTC5661]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1119628 EL085_RS11890 WP_126511043.1 2530406..2530912(-) (ssbA) [Staphylococcus pseudintermedius strain NCTC5661]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AATTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.476

0.375

Multiple sequence alignment