Detailed information NTG1119600

Bioinformatically predicted

Overview

• Name: ccrA
• Type: Machinery gene
• Locus tag: EL085_RS00205
• Genome accession: NZ_LR134267
• Coordinates: 45615..46964 (-)
• Length: 449 a.a.
• NCBI ID: WP_126510820.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain NCTC5661
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43965..45455	45615..46964	flank	160

Gene organization within MGE regions

Location: 43965..46964

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL085_RS00200 (SAMEA3504576_00043)	ccrB	43965..45593 (-)	1629	WP_126510819.1	recombinase family protein	Machinery gene
EL085_RS00205 (SAMEA3504576_00044)	ccrA	45615..46964 (-)	1350	WP_126510820.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 52191.98 Da
• Isoelectric Point: 10.1062

>NTDB_id=1119600 EL085_RS00205 WP_126510820.1 45615..46964(-) (ccrA) [Staphylococcus pseudintermedius strain NCTC5661]
MKQAIGYLRQSTTKQQSLSAQKQKIKSLAEKHNIQNITFYSDKQSGRTDKRNGYQQVITLIQQGHCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLEEDTKLINRKPYQVRNIITNSNYCGRVNNKYGTFDNMFPSIISKAM
YKNAQAIRVNKQVQRTPSANLLKQKIKCPYCGSTLTNMTIRKTNHSLRYYVCPKNMNASRFICDFKGINAENLEKQVLES
CQKFFRDQQLYSKIKHAIEKQVKKQRMHDTSNTLTQEKLIENLAQEKIDVETFREQSQSINLQNKPIQAISDTQLQTSLQ
KVIQKSFTLNMLYPYIDEIHITKNKELSGIYIKNEPLNIVNQTIQSSTG

Nucleotide

• Length: 1350 bp

>NTDB_id=1119600 EL085_RS00205 WP_126510820.1 45615..46964(-) (ccrA) [Staphylococcus pseudintermedius strain NCTC5661]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCTCAGCCCAAAAACAAAAAATCAAGTC
ATTAGCTGAAAAACACAATATCCAAAACATCACGTTTTATAGTGATAAACAATCAGGTCGAACTGATAAACGCAATGGTT
ACCAACAAGTCATTACGCTAATTCAACAAGGTCACTGTGACGTATTATGTTGTTATCGCTTAAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGTTATTTTGA
TATGGATAAAGCGTTTGATCGACTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAATCCGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGT
AATGGTACATTCACAATTAATCAAGATGAAGCACCAACGGTGAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAGAAGATACTAAGCTAATCAACCGAAAACCCTATCAAGTACGTAACATTATTACGA
ACTCTAATTACTGTGGACGTGTGAATAACAAATACGGTACTTTTGATAATATGTTCCCATCTATTATCAGTAAAGCAATG
TATAAAAATGCTCAAGCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTATTGTGGTTCAACCCTTACCAACATGACCATTAGAAAAACCAATCATTCATTACGTTATTATGTCTGTCCTA
AAAACATGAATGCATCACGTTTCATATGTGACTTTAAAGGCATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAATCT
TGCCAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACATGCTATTGAGAAACAGGTCAAAAAACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGGAAAAGCTTATTGAAAATTTAGCACAAGAAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAATT
AAGCGGAATCTATATAAAAAATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGGCTAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (261-322)

• Resolvase, N terminal domain (Resolvase) (4-147)

• Recombinase (Recombinase) (169-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrA	Staphylococcus aureus COL	75.615	99.555	0.753
ccrA	Staphylococcus aureus N315	71.047	100	0.71