Detailed information NTG1119599

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: EL085_RS00200
• Genome accession: NZ_LR134267
• Coordinates: 43965..45593 (-)
• Length: 542 a.a.
• NCBI ID: WP_126510819.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain NCTC5661
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	43965..45455	43965..45593	within	0

Gene organization within MGE regions

Location: 43965..45593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL085_RS00200 (SAMEA3504576_00043)	ccrB	43965..45593 (-)	1629	WP_126510819.1	recombinase family protein	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62628.43 Da
• Isoelectric Point: 9.6532

>NTDB_id=1119599 EL085_RS00200 WP_126510819.1 43965..45593(-) (ccrB) [Staphylococcus pseudintermedius strain NCTC5661]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGN
LPLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQDLWDKVQARKKQVSKKPQVHGKGTNLLTGIIVCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLNTSSLFLPQTLYFQI

Nucleotide

• Length: 1629 bp

>NTDB_id=1119599 EL085_RS00200 WP_126510819.1 43965..45593(-) (ccrB) [Staphylococcus pseudintermedius strain NCTC5661]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTTAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCAAGTTTTTCCG
AATTTGAAAGAAATACCATTTTAGAGAACATTTATACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAAT
CTTCCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATA
TATCTTTGAATCTTATGCCAAAGGTCATGGCTATCGTAAAATTGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGA
AAGGTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCAAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTAT
TAGTCAAGATTTATGGGATAAAGTGCAAGCACGTAAGAAGCAAGTAAGCAAAAAGCCACAGGTACATGGTAAAGGGACAA
ATCTGTTAACTGGAATAATTGTCTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAACACACTCAAAGAC
GGTACTAAAAAACGCATTCGGTATTATTCATGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTCGAAATAGTCAAAAGTGATAAAGTTATCAAACAAGTTG
TCGAACGTGTTAATCAAGAAAATCAAGTCGATGTAGCTGCGCTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAACACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA

Domains

Predicted by InterproScan.

• Recombinase zinc beta ribbon domain (Zn_ribbon_recom) (295-360)

• Resolvase, N terminal domain (Resolvase) (11-155)

• Recombinase (Recombinase) (180-280)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	84.317	100	0.843