Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL081_RS08245 Genome accession   NZ_LR134266
Coordinates   1587114..1587608 (-) Length   164 a.a.
NCBI ID   WP_126404770.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1582114..1592608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS08225 (NCTC3166_01623) - 1584318..1585262 (+) 945 WP_126404767.1 magnesium transporter CorA family protein -
  EL081_RS08230 (NCTC3166_01624) - 1585291..1585965 (+) 675 WP_126404768.1 DUF1129 family protein -
  EL081_RS08235 (NCTC3166_01625) - 1586000..1586521 (-) 522 WP_126404769.1 GNAT family N-acetyltransferase -
  EL081_RS08240 (NCTC3166_01626) rpsR 1586833..1587072 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL081_RS08245 (NCTC3166_01627) ssb 1587114..1587608 (-) 495 WP_126404770.1 single-stranded DNA-binding protein Machinery gene
  EL081_RS08250 (NCTC3166_01628) rpsF 1587635..1587925 (-) 291 WP_006595679.1 30S ribosomal protein S6 -
  EL081_RS08255 (NCTC3166_01629) - 1588204..1589256 (+) 1053 WP_126404771.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  EL081_RS08260 (NCTC3166_01630) - 1589243..1590145 (+) 903 WP_126404772.1 phosphodiester glycosidase family protein -
  EL081_RS08265 (NCTC3166_01631) - 1590126..1590533 (+) 408 WP_126405071.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17851.56 Da        Isoelectric Point: 4.7079

>NTDB_id=1119586 EL081_RS08245 WP_126404770.1 1587114..1587608(-) (ssb) [Streptococcus viridans strain NCTC3166]
MINNVVLVGRMTRDAELRYTPQNQAVATFSLAVNRNFKNQNGERDADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRANREGQAGGGYSSGGGFAGNAAPSFGGSEPSNATPNFGRDDNPFGANPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1119586 EL081_RS08245 WP_126404770.1 1587114..1587608(-) (ssb) [Streptococcus viridans strain NCTC3166]
ATGATTAACAATGTTGTACTTGTAGGTCGTATGACTCGAGATGCTGAACTTCGTTATACCCCTCAAAACCAGGCTGTTGC
GACATTTTCACTTGCTGTTAACCGTAATTTTAAAAACCAAAATGGTGAACGAGATGCGGACTTTATCAACTGTGTGATTT
GGCGTCAACAAGCTGAAAATTTAGCAAATTGGGCTAAAAAGGGTGCCTTAGTTGGGATTACAGGTCGTATCCAGACTCGT
AATTATGAGAATCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCGGACAGCTTCCAATTGTTGGAAAGCCGCGC
GAATCGTGAAGGACAAGCTGGTGGAGGTTATTCTTCAGGTGGAGGATTTGCAGGAAATGCAGCTCCAAGCTTTGGAGGAT
CTGAACCATCGAACGCAACACCAAACTTTGGACGTGATGACAATCCATTTGGAGCTAATCCAATGGACATCTCGGATGAC
GATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.195

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.622
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.542

71.951

0.378

Multiple sequence alignment