Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   EL081_RS07200 Genome accession   NZ_LR134266
Coordinates   1374430..1375434 (-) Length   334 a.a.
NCBI ID   WP_117744504.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369430..1380434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS07180 (NCTC3166_01420) thrS 1369579..1371522 (-) 1944 WP_126404597.1 threonine--tRNA ligase -
  EL081_RS07185 (NCTC3166_01422) - 1371855..1373177 (-) 1323 WP_126404599.1 glycosyltransferase family 4 protein -
  EL081_RS07190 (NCTC3166_01423) - 1373179..1374177 (-) 999 WP_126404601.1 glycosyltransferase -
  EL081_RS07200 (NCTC3166_01424) ccpA 1374430..1375434 (-) 1005 WP_117744504.1 catabolite control protein A Regulator
  EL081_RS07205 (NCTC3166_01425) - 1375595..1376677 (+) 1083 WP_126404603.1 Xaa-Pro peptidase family protein -
  EL081_RS07210 (NCTC3166_01426) - 1376701..1377039 (+) 339 WP_126404604.1 hypothetical protein -
  EL081_RS07215 (NCTC3166_01427) - 1377136..1377585 (-) 450 WP_126404606.1 Rrf2 family transcriptional regulator -
  EL081_RS07220 (NCTC3166_01428) - 1377729..1378571 (-) 843 WP_126404608.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37019.19 Da        Isoelectric Point: 6.9973

>NTDB_id=1119583 EL081_RS07200 WP_117744504.1 1374430..1375434(-) (ccpA) [Streptococcus viridans strain NCTC3166]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKQATVDAVTLLAKRNKKIAFVSGPLVDDINGKIRLAGYKDALKAKKLSYSEGLVFESKYRYEEGYNLAERIIASK
ATAAFVTGDELAAGLLNGLADQGVKVPEDFELITSDDSQITRYTRPNLSTVGQPLYDLGAISMRMLTKIMHKEELEEREV
LLAHTINHRGTTKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1119583 EL081_RS07200 WP_117744504.1 1374430..1375434(-) (ccpA) [Streptococcus viridans strain NCTC3166]
ATGAATACAGACGATACTGTAACCATTTACGACGTTGCCCGAGAGGCGGGTGTCTCAATGGCGACTGTTAGCCGTGTCGT
GAACGGAAATAAGAACGTTAAGGAAAATACTCGTAAAAAAGTATTGGAAGTCATTGAACGTTTGGACTATCGTCCGAATG
CAGTAGCTCGTGGACTTGCGAGTAAGAAAACCACAACGGTAGGTGTTGTAATTCCGAATATTACCAATAGTTACTTTTCT
ACTTTAGCTAAAGGAATTGATGATATCGCAGAAATGTATAAATACAACATCGTCCTTGCTAATAGTGATGAAGATGATGA
TAAAGAAGTTTCTGTTGTCAATACTCTTTTCTCAAAACAGGTCGATGGGATTATATTCATGGGCTACCACTTGACAGAAA
AGATTCGTTCAGAATTCTCTCGTTCTCGGACGCCAGTGGTCCTTGCTGGGACAGTTGATGTCGAACATCAATTGCCAAGT
GTCAATATCGATTATAAGCAAGCGACAGTAGACGCGGTTACACTATTGGCTAAACGAAATAAAAAGATTGCTTTTGTAAG
TGGACCATTAGTGGATGATATCAATGGAAAGATTCGCTTGGCTGGCTACAAAGATGCTTTAAAAGCAAAAAAATTGTCTT
ATAGTGAAGGATTGGTCTTTGAGTCTAAATACCGCTATGAAGAAGGCTATAACTTAGCTGAACGCATCATTGCATCCAAA
GCGACAGCAGCCTTTGTGACTGGGGATGAATTGGCAGCAGGTTTGCTTAATGGTCTAGCTGATCAAGGTGTGAAAGTACC
GGAAGATTTTGAGTTGATTACCAGTGATGATTCACAAATTACACGCTACACTCGTCCAAACCTTTCAACTGTTGGGCAAC
CACTATATGACTTGGGAGCTATCAGTATGCGGATGTTGACAAAAATTATGCATAAAGAAGAATTGGAAGAAAGAGAAGTT
CTTCTTGCCCATACCATCAATCATCGTGGGACTACTAAGAAGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

91.317

100

0.913
  ccpA Streptococcus pneumoniae D39

85.03

100

0.85
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.402

99.102

0.569

Multiple sequence alignment