Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   EL081_RS06555 Genome accession   NZ_LR134266
Coordinates   1239516..1241516 (-) Length   666 a.a.
NCBI ID   WP_126404470.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234516..1246516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS06545 (NCTC3166_01292) trxA 1235925..1236239 (-) 315 WP_006595996.1 thioredoxin -
  EL081_RS06550 (NCTC3166_01293) - 1236333..1239401 (-) 3069 WP_126404469.1 CocE/NonD family hydrolase -
  EL081_RS06555 (NCTC3166_01294) amiA3 1239516..1241516 (-) 2001 WP_126404470.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS06560 (NCTC3166_01295) trpA 1241626..1242411 (-) 786 WP_126404471.1 tryptophan synthase subunit alpha -
  EL081_RS06565 (NCTC3166_01296) trpB 1242414..1243616 (-) 1203 WP_126404472.1 tryptophan synthase subunit beta -
  EL081_RS06570 (NCTC3166_01297) - 1243613..1244194 (-) 582 WP_126404473.1 phosphoribosylanthranilate isomerase -
  EL081_RS06575 (NCTC3166_01298) trpC 1244181..1244948 (-) 768 WP_126404474.1 indole-3-glycerol phosphate synthase TrpC -
  EL081_RS06580 (NCTC3166_01299) trpD 1244945..1245949 (-) 1005 WP_126404475.1 anthranilate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74095.37 Da        Isoelectric Point: 4.6860

>NTDB_id=1119578 EL081_RS06555 WP_126404470.1 1239516..1241516(-) (amiA3) [Streptococcus viridans strain NCTC3166]
MKKRNVIALAGVALLSAGILAACSGGSKPSSSSSKSSEAGQKFSYVYETEPENLNYITSGKAATHEITGNLIDGLFENDK
YGNLIPSLAKDWTVSEDGLTYTYKLRDDAKWYDSEGEEYADVTAEDFVAGIKYAADHKSEMLYIIQNSIKGLNDYVEGKT
SDFSNVGIKAVDDHTLQITLNQAEPFWNSKLTLGITFPINEKFVESKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMS
KNENYWDKDNVHITDVKLEYYDGQDQSKLANSFEDNALSLAKLFPTGPGFTDQAKKFKDEIIYTPQDASTFVIGVNIDRQ
SYKYTAKTTDEEKSSTKKALLNKDFRQAISFAFDRESYAAQANGKDGASKLIRNLYIPPTFVQADGKTFGEMVKTELVTY
GDEWKDANLDDGQNGLYNEKQAKEEFAKAKSALEADGVKFPIHLDMPVDQTTQSKVQRAQSFKQSVESTLGKENVVVDIH
MVSKEDLLNVTLFAAKAEDEDWDISDNVGWSPDYQDPSTYLDILKASSGENTRTFLGFDPSENNEAAKKVGLYDFEKMVT
EAGAETKDLNKRYEKYAAAQAWLTDSALVIPTTSKTGRPFLTRVVPFSAPFGWTGGKGKDNVVYKGMELQDKAVTTEDYN
KALEKWKKEQAESNQKAQEELKDHVK

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=1119578 EL081_RS06555 WP_126404470.1 1239516..1241516(-) (amiA3) [Streptococcus viridans strain NCTC3166]
ATGAAAAAAAGAAATGTCATTGCTCTTGCAGGAGTAGCTCTTCTTTCAGCAGGTATTCTTGCAGCATGTTCCGGTGGTTC
TAAACCATCAAGCTCAAGCTCAAAATCAAGTGAAGCAGGTCAAAAATTCTCTTACGTTTACGAGACAGAACCTGAAAACT
TGAACTACATCACATCTGGTAAAGCTGCAACCCATGAAATCACAGGAAACTTGATTGATGGATTGTTTGAAAACGACAAG
TATGGGAATTTGATTCCTTCACTTGCTAAAGATTGGACAGTTTCAGAAGATGGCTTGACTTATACTTACAAACTTCGTGA
TGATGCCAAATGGTATGATTCAGAAGGGGAAGAGTATGCGGACGTGACAGCTGAAGACTTCGTTGCAGGGATCAAGTATG
CCGCTGACCACAAGTCTGAAATGCTCTACATCATTCAAAACTCTATCAAGGGCTTGAATGATTATGTTGAAGGTAAGACT
TCAGACTTCTCAAATGTAGGCATTAAAGCAGTCGATGATCATACCCTTCAAATCACTTTGAACCAAGCAGAGCCTTTCTG
GAATTCTAAGTTGACTCTTGGAATCACTTTCCCTATCAACGAGAAATTCGTAGAATCTAAAGGGGATAAATTTGCCCAAG
CAAGTGACACTAGCTCTCTTCTTTACAATGGTCCATACATCTTGAAGAGCTTCACTTCTAAATCATCTATCGAGATGAGC
AAGAATGAAAACTACTGGGATAAGGACAATGTTCACATCACAGATGTTAAGCTCGAGTACTATGATGGTCAAGACCAAAG
TAAATTGGCCAACTCGTTTGAGGACAATGCTCTTAGCCTTGCTAAATTGTTCCCAACTGGACCTGGATTTACAGACCAAG
CTAAGAAGTTTAAAGATGAAATCATCTACACACCTCAAGATGCCAGCACATTCGTTATCGGTGTGAATATCGACCGTCAG
TCTTACAAGTACACTGCAAAAACAACAGATGAAGAAAAATCATCTACTAAGAAAGCTCTTTTGAACAAAGACTTCCGTCA
AGCAATCAGCTTTGCCTTTGACCGTGAATCTTATGCTGCCCAAGCAAATGGTAAAGATGGAGCAAGCAAACTGATCCGTA
ACTTGTACATCCCACCTACATTCGTTCAAGCAGATGGCAAGACCTTCGGTGAGATGGTTAAAACTGAGTTGGTTACTTAT
GGAGACGAGTGGAAAGATGCAAATCTTGACGATGGTCAGAATGGTCTTTACAACGAAAAACAAGCTAAAGAAGAGTTTGC
AAAAGCAAAATCTGCACTTGAAGCAGACGGTGTGAAATTCCCAATCCACTTGGATATGCCAGTTGACCAAACGACTCAAT
CTAAGGTTCAACGTGCTCAATCTTTCAAACAATCGGTTGAAAGTACGCTTGGAAAAGAAAACGTCGTTGTCGACATCCAT
ATGGTATCCAAAGAAGACCTCTTGAACGTGACGCTCTTTGCTGCTAAAGCAGAAGACGAAGACTGGGATATCTCAGATAA
CGTTGGATGGAGCCCTGACTATCAAGACCCATCAACTTACCTTGATATCTTGAAAGCATCTTCTGGTGAAAATACTCGTA
CCTTCCTTGGATTTGACCCAAGCGAAAACAATGAGGCAGCTAAGAAAGTTGGTCTCTACGACTTTGAGAAGATGGTAACG
GAAGCAGGAGCTGAAACCAAAGACCTTAACAAACGTTATGAGAAATATGCTGCAGCTCAAGCTTGGTTGACAGATAGTGC
TTTGGTTATCCCAACAACATCTAAGACTGGTCGTCCATTCTTGACTCGTGTTGTACCATTCTCAGCACCATTTGGCTGGA
CCGGTGGTAAAGGGAAAGACAACGTTGTCTATAAAGGCATGGAACTTCAAGACAAGGCTGTAACAACCGAAGACTACAAC
AAAGCTCTTGAAAAATGGAAGAAAGAGCAAGCAGAGTCTAACCAAAAAGCTCAAGAAGAATTAAAAGATCATGTGAAATA
A

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.522

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

56.372

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.222

100

0.563

Multiple sequence alignment