Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   EL081_RS01635 Genome accession   NZ_LR134266
Coordinates   284647..286629 (+) Length   660 a.a.
NCBI ID   WP_126403739.1    Uniprot ID   -
Organism   Streptococcus viridans strain NCTC3166     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 279647..291629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL081_RS01605 (NCTC3166_00323) - 280306..281052 (-) 747 WP_126403734.1 ABC transporter -
  EL081_RS01610 (NCTC3166_00324) - 281045..281878 (-) 834 WP_126403735.1 ABC transporter ATP-binding protein -
  EL081_RS01615 (NCTC3166_00325) - 281875..282105 (-) 231 WP_126403736.1 hypothetical protein -
  EL081_RS01620 (NCTC3166_00326) - 282335..283258 (-) 924 WP_126403737.1 XRE family transcriptional regulator -
  EL081_RS01625 (NCTC3166_00327) - 283550..283690 (+) 141 WP_006595056.1 bacteriocin -
  EL081_RS01630 (NCTC3166_00328) - 283785..284459 (+) 675 WP_126403738.1 type II CAAX endopeptidase family protein -
  EL081_RS01635 (NCTC3166_00329) amiA 284647..286629 (+) 1983 WP_126403739.1 peptide ABC transporter substrate-binding protein Regulator
  EL081_RS01640 (NCTC3166_00330) leuS 286833..289334 (+) 2502 WP_126403740.1 leucine--tRNA ligase -
  EL081_RS01645 (NCTC3166_00331) - 289545..289703 (-) 159 WP_048717604.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  EL081_RS01650 (NCTC3166_00332) - 289918..290106 (-) 189 WP_126403741.1 Blp family class II bacteriocin -
  EL081_RS01655 (NCTC3166_00333) - 290275..290967 (+) 693 WP_126403742.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73558.33 Da        Isoelectric Point: 4.6788

>NTDB_id=1119551 EL081_RS01635 WP_126403739.1 284647..286629(+) (amiA) [Streptococcus viridans strain NCTC3166]
MKKGKLLLATGALLLSVSALVACSQGGKSSSSDNQVYSYVYTQDPDTLDYSLSNKRSTSEFTGNAVDGLLEVDKYGNLIP
SLAKDWTVSKDGLTYTYKLRKGVKWLTAEGEEYGEVKAQDFVTGLQHAADKKSSALYLVQQSVKGLDDYVSGKTKDFSTV
GIKAIDDYTVQFTLNQPESFWNSKTTMGILMPVNKEFLDSKGDDYGQGTNPSSILYCGPYLIKSITSKSVVTLEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDFTVARVFPNGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQAYEITT
KTTDAQKSSTKKAILNKDFRQAIMFAFNRQSYVAQANGEASADKVIRNTFTPPNFVQIDGKEFGEAVEKNLEAYGDEWKG
VSIEDGKDTLYNPTKAKEEFAKAKEALQAQGVEFPIHLDLPVSSTFTEGVKQAQSFKQSIESTLGAENVVIDLNMISEDD
LQRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYLDITNSKNGENANSYFGFDAGTNNAAAKEAGFDEYDQLIEDAHNET
KDVNDRYEKYAKAQAWLTDSALLIPIHSDGASPGVRKTVPYTAAFAWTGHKGQTFNYKYLELQDKVLTTKEYDEAREQWK
KEKEESNKKAQKELESHVED

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1119551 EL081_RS01635 WP_126403739.1 284647..286629(+) (amiA) [Streptococcus viridans strain NCTC3166]
ATGAAAAAAGGGAAGCTACTCTTAGCCACCGGCGCTCTGCTTTTGTCTGTAAGCGCACTGGTAGCCTGCTCACAAGGAGG
GAAATCTTCAAGTTCGGACAACCAGGTCTATAGCTATGTCTATACGCAAGATCCGGATACTTTGGATTATTCACTTTCTA
ATAAACGGTCAACTTCAGAATTTACAGGTAATGCTGTGGATGGTTTGTTAGAAGTTGACAAATACGGCAACTTAATCCCA
TCTCTTGCTAAGGATTGGACTGTTTCAAAAGATGGTCTGACCTACACCTATAAACTTCGTAAAGGGGTCAAATGGCTGAC
TGCTGAAGGAGAAGAGTATGGGGAAGTCAAGGCCCAAGACTTTGTGACGGGGCTTCAGCACGCGGCGGATAAGAAATCTT
CGGCCCTCTATCTCGTCCAACAATCCGTTAAAGGGTTGGATGATTATGTCTCAGGAAAAACCAAAGACTTCTCAACGGTT
GGTATCAAAGCCATTGATGACTATACGGTTCAATTCACCTTGAACCAACCAGAAAGTTTCTGGAATTCAAAAACGACTAT
GGGCATTTTGATGCCAGTCAATAAAGAATTCTTAGATTCTAAGGGTGATGACTACGGTCAAGGCACGAACCCTTCTAGTA
TTCTTTATTGTGGTCCTTATTTGATCAAATCCATCACATCTAAATCTGTTGTGACGCTTGAAAAGAATCCAACCTATTGG
GATGCAGATAATGTCAAGATTTCTAAGGTGAAGCTAACCTATTATGACGGGCAAGATTCAGAATCTTTGATCCGTGGTTT
TGATAACGGAGACTTTACCGTTGCCCGTGTCTTCCCGAATGGTTCTAACTATAAGAGTGTAGAGAAGAAACACAAAGATG
ACATCGTCTTTAGTGACCAAGGATCCTCTACTTATAACTTGTCCTTCAATATTGACCGTCAAGCTTATGAGATTACAACT
AAAACGACAGATGCTCAAAAGAGTTCAACCAAGAAAGCAATCTTGAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
TAATCGTCAATCCTATGTAGCTCAAGCTAACGGGGAAGCATCTGCGGATAAGGTCATTCGGAATACCTTTACTCCTCCTA
ACTTTGTCCAAATCGATGGCAAGGAATTTGGGGAAGCTGTAGAGAAAAACCTAGAAGCATACGGTGATGAATGGAAAGGT
GTCTCTATCGAAGATGGAAAAGATACCCTTTACAATCCAACCAAGGCTAAGGAAGAATTTGCCAAGGCTAAAGAAGCCCT
TCAAGCCCAAGGGGTAGAATTCCCGATTCATTTGGACCTCCCTGTTTCATCAACCTTTACAGAAGGAGTCAAGCAAGCAC
AATCCTTTAAACAGTCAATCGAATCCACTCTGGGAGCAGAAAATGTAGTCATCGACTTGAATATGATTTCTGAGGATGAT
CTTCAACGAGTGACCTACTTTGCTGAAAATGCTTCTCAACAAGACTGGGATTTGAACAACAACTTGGGTTGGGGTCCAGA
CTATACCGATCCATCTTCTTACCTAGATATCACAAACTCTAAGAATGGTGAAAATGCAAATTCTTACTTCGGATTTGATG
CTGGTACTAATAACGCAGCTGCTAAAGAAGCTGGTTTTGATGAATACGATCAATTGATTGAAGATGCACATAATGAAACA
AAAGATGTCAATGACCGCTATGAAAAATATGCTAAGGCTCAGGCTTGGTTGACTGATAGTGCCCTCTTAATCCCGATTCA
TTCAGATGGTGCCTCTCCAGGTGTTCGTAAGACAGTTCCATACACAGCTGCCTTTGCTTGGACAGGACACAAGGGTCAAA
CCTTCAACTACAAGTACTTGGAATTGCAAGACAAAGTTTTGACAACCAAGGAGTACGATGAAGCGCGTGAACAATGGAAG
AAAGAAAAAGAAGAATCCAATAAGAAAGCTCAAAAAGAACTAGAAAGTCACGTAGAAGACTAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.455

100

0.555
  amiA3 Streptococcus thermophilus LMD-9

55.219

100

0.553
  amiA3 Streptococcus thermophilus LMG 18311

55.068

100

0.552

Multiple sequence alignment