Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EL071_RS11690 Genome accession   NZ_LR134265
Coordinates   2234361..2235335 (-) Length   324 a.a.
NCBI ID   WP_001008571.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC8184     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2229361..2240335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL071_RS11655 (NCTC8184_02325) pepA 2229425..2230492 (+) 1068 WP_001281321.1 glutamyl aminopeptidase -
  EL071_RS11660 (NCTC8184_02326) proC 2230562..2231332 (+) 771 WP_001869147.1 pyrroline-5-carboxylate reductase -
  EL071_RS11665 (NCTC8184_02327) - 2231353..2232018 (-) 666 WP_000008107.1 type II CAAX endopeptidase family protein -
  EL071_RS11670 (NCTC8184_02328) - 2232087..2232542 (-) 456 WP_115356965.1 hypothetical protein -
  EL071_RS11675 - 2232583..2232720 (-) 138 WP_001869149.1 hypothetical protein -
  EL071_RS11680 (NCTC8184_02329) - 2232779..2232985 (-) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  EL071_RS11685 (NCTC8184_02330) - 2233136..2234329 (-) 1194 WP_000047534.1 acetate kinase -
  EL071_RS11690 (NCTC8184_02331) comYH 2234361..2235335 (-) 975 WP_001008571.1 class I SAM-dependent methyltransferase Machinery gene
  EL071_RS11695 (NCTC8184_02332) comGG 2235450..2235821 (-) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  EL071_RS11700 (NCTC8184_02333) comGF 2235799..2236245 (-) 447 WP_115356966.1 competence type IV pilus minor pilin ComGF -
  EL071_RS11705 (NCTC8184_02334) comGE 2236199..2236498 (-) 300 WP_038406052.1 competence type IV pilus minor pilin ComGE -
  EL071_RS11710 (NCTC8184_02335) comYD 2236470..2236883 (-) 414 WP_115356967.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL071_RS11715 (NCTC8184_02336) comGC/cglC 2236858..2237187 (-) 330 WP_115356968.1 competence type IV pilus major pilin ComGC Machinery gene
  EL071_RS11720 (NCTC8184_02337) comYB 2237184..2238227 (-) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL071_RS11725 (NCTC8184_02338) comYA 2238121..2239092 (-) 972 WP_115356969.1 competence type IV pilus ATPase ComGA Machinery gene
  EL071_RS11735 (NCTC8184_02339) - 2239264..2239629 (-) 366 WP_115356970.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37086.96 Da        Isoelectric Point: 4.4041

>NTDB_id=1119533 EL071_RS11690 WP_001008571.1 2234361..2235335(-) (comYH) [Streptococcus agalactiae strain NCTC8184]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1119533 EL071_RS11690 WP_001008571.1 2234361..2235335(-) (comYH) [Streptococcus agalactiae strain NCTC8184]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCCGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment