Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL101_RS12965 Genome accession   NZ_LR134263
Coordinates   2759216..2759719 (-) Length   167 a.a.
NCBI ID   WP_096539724.1    Uniprot ID   A0AAQ0M749
Organism   Staphylococcus delphini strain NCTC12225     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2754216..2764719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL101_RS12950 (NCTC12225_02668) - 2755404..2757395 (+) 1992 WP_096595878.1 catalase -
  EL101_RS12955 (NCTC12225_02669) - 2757472..2758704 (-) 1233 WP_126489892.1 MFS transporter -
  EL101_RS12960 (NCTC12225_02670) rpsR 2758921..2759163 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  EL101_RS12965 (NCTC12225_02671) ssbA 2759216..2759719 (-) 504 WP_096539724.1 single-stranded DNA-binding protein Machinery gene
  EL101_RS12970 (NCTC12225_02672) rpsF 2759742..2760038 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  EL101_RS12975 (NCTC12225_02673) - 2760381..2761871 (+) 1491 WP_096595880.1 B domain-containing protein -
  EL101_RS12980 (NCTC12225_02674) - 2761925..2762734 (-) 810 WP_096595881.1 ABC transporter permease -
  EL101_RS12985 (NCTC12225_02675) - 2762727..2763662 (-) 936 WP_096595882.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18610.29 Da        Isoelectric Point: 5.1957

>NTDB_id=1119457 EL101_RS12965 WP_096539724.1 2759216..2759719(-) (ssbA) [Staphylococcus delphini strain NCTC12225]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQPANDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1119457 EL101_RS12965 WP_096539724.1 2759216..2759719(-) (ssbA) [Staphylococcus delphini strain NCTC12225]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTTAACAACTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAGAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGTTTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTACCAAAACAATCATCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGCCCTATCGATATT
AGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.143

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383

Multiple sequence alignment