Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EL101_RS04510 Genome accession   NZ_LR134263
Coordinates   997544..998173 (+) Length   209 a.a.
NCBI ID   WP_014613482.1    Uniprot ID   -
Organism   Staphylococcus delphini strain NCTC12225     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 992544..1003173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL101_RS04485 (NCTC12225_00929) - 993457..994455 (-) 999 WP_096542445.1 aromatic acid exporter family protein -
  EL101_RS04490 (NCTC12225_00930) map 994552..995313 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  EL101_RS04495 (NCTC12225_00931) - 995411..995800 (+) 390 WP_096597673.1 hypothetical protein -
  EL101_RS04500 (NCTC12225_00932) liaF 995813..996514 (+) 702 WP_096597675.1 cell wall-active antibiotics response protein LiaF -
  EL101_RS04505 (NCTC12225_00933) vraS 996511..997554 (+) 1044 WP_019166463.1 sensor histidine kinase Regulator
  EL101_RS04510 (NCTC12225_00934) vraR 997544..998173 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  EL101_RS04515 (NCTC12225_00935) - 999056..999637 (-) 582 WP_096597677.1 carbonic anhydrase -
  EL101_RS04520 (NCTC12225_00936) - 999670..1001007 (-) 1338 WP_096597679.1 YihY/virulence factor BrkB family protein -
  EL101_RS04525 (NCTC12225_00937) - 1001223..1001510 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  EL101_RS04530 (NCTC12225_00938) - 1001518..1001976 (-) 459 WP_019166466.1 low molecular weight protein-tyrosine-phosphatase -
  EL101_RS04535 (NCTC12225_00939) - 1002110..1002313 (+) 204 WP_019169369.1 DUF1128 family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23484.17 Da        Isoelectric Point: 5.1671

>NTDB_id=1119435 EL101_RS04510 WP_014613482.1 997544..998173(+) (vraR) [Staphylococcus delphini strain NCTC12225]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1119435 EL101_RS04510 WP_014613482.1 997544..998173(+) (vraR) [Staphylococcus delphini strain NCTC12225]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTGGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTGAAACCGGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACGAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTCGATAGTTATATTTTAAAAACGAC
AAGTGCTAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAGTTGTTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGAAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCTTTCCAACATGGGCTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.823

100

0.928
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383

Multiple sequence alignment