Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EL075_RS07490 Genome accession   NZ_LR134244
Coordinates   1562984..1563859 (-) Length   291 a.a.
NCBI ID   WP_373364739.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC7291     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1516533..1590482 1562984..1563859 within 0


Gene organization within MGE regions


Location: 1516533..1590482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL075_RS07295 (NCTC7291_01501) - 1517014..1517229 (+) 216 WP_002467042.1 hypothetical protein -
  EL075_RS07300 (NCTC7291_01502) rny 1517351..1518910 (-) 1560 WP_126403206.1 ribonuclease Y -
  EL075_RS07305 (NCTC7291_01503) recA 1519357..1520403 (-) 1047 WP_002451246.1 recombinase RecA Machinery gene
  EL075_RS07310 (NCTC7291_01504) - 1520570..1521721 (-) 1152 WP_002465812.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  EL075_RS07315 (NCTC7291_01505) pgsA 1521894..1522469 (-) 576 WP_015365063.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL075_RS07320 (NCTC7291_01506) - 1522500..1522892 (-) 393 WP_002465806.1 helix-turn-helix domain-containing protein -
  EL075_RS07325 (NCTC7291_01507) - 1522913..1523749 (-) 837 WP_015365064.1 YmfK family protein -
  EL075_RS07330 (NCTC7291_01508) ymfI 1523884..1524588 (-) 705 WP_002465810.1 elongation factor P 5-aminopentanone reductase -
  EL075_RS07335 (NCTC7291_01509) yfmH 1524585..1525874 (-) 1290 WP_015365066.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EL075_RS07340 (NCTC7291_01510) yfmF 1525874..1527160 (-) 1287 WP_037539758.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EL075_RS07345 (NCTC7291_01511) - 1527173..1527886 (-) 714 WP_015365067.1 GntR family transcriptional regulator -
  EL075_RS12180 - 1527889..1529340 (-) 1452 Protein_1417 DNA translocase FtsK -
  EL075_RS12185 - 1529452..1530285 (-) 834 Protein_1418 cell division protein FtsK -
  EL075_RS07355 (NCTC7291_01513) rnjB 1530525..1532198 (-) 1674 WP_015365069.1 ribonuclease J2 -
  EL075_RS07365 pnp 1532385..1534484 (-) 2100 WP_002466036.1 polyribonucleotide nucleotidyltransferase -
  EL075_RS07370 (NCTC7291_01516) rpsO 1534620..1534889 (-) 270 WP_002450539.1 30S ribosomal protein S15 -
  EL075_RS07375 (NCTC7291_01517) ribF 1535003..1535974 (-) 972 WP_126403207.1 riboflavin biosynthesis protein RibF -
  EL075_RS07380 (NCTC7291_01518) truB 1535987..1536904 (-) 918 WP_002466042.1 tRNA pseudouridine(55) synthase TruB -
  EL075_RS07385 (NCTC7291_01519) rbfA 1537057..1537407 (-) 351 WP_002466047.1 30S ribosome-binding factor RbfA -
  EL075_RS07390 (NCTC7291_01520) infB 1537547..1539712 (-) 2166 WP_015365072.1 translation initiation factor IF-2 -
  EL075_RS07395 (NCTC7291_01521) - 1539717..1540034 (-) 318 WP_002466040.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  EL075_RS07400 (NCTC7291_01522) rnpM 1540031..1540318 (-) 288 WP_002450545.1 RNase P modulator RnpM -
  EL075_RS07405 (NCTC7291_01523) nusA 1540338..1541570 (-) 1233 WP_126403208.1 transcription termination factor NusA -
  EL075_RS07410 (NCTC7291_01524) rimP 1541591..1542058 (-) 468 WP_015365074.1 ribosome maturation factor RimP -
  EL075_RS07415 (NCTC7291_01525) - 1542241..1546551 (-) 4311 WP_126403437.1 PolC-type DNA polymerase III -
  EL075_RS07420 (NCTC7291_01526) - 1546819..1548522 (-) 1704 WP_002466052.1 proline--tRNA ligase -
  EL075_RS07425 (NCTC7291_01527) rseP 1548542..1549828 (-) 1287 WP_126403209.1 RIP metalloprotease RseP -
  EL075_RS07430 (NCTC7291_01528) - 1550071..1550853 (-) 783 WP_002466065.1 phosphatidate cytidylyltransferase -
  EL075_RS07435 (NCTC7291_01529) - 1550857..1551627 (-) 771 WP_002466060.1 isoprenyl transferase -
  EL075_RS07440 (NCTC7291_01530) frr 1551860..1552414 (-) 555 WP_002450553.1 ribosome recycling factor -
  EL075_RS07445 (NCTC7291_01531) pyrH 1552430..1553152 (-) 723 WP_002450554.1 UMP kinase -
  EL075_RS07450 (NCTC7291_01532) tsf 1553293..1554171 (-) 879 WP_126403210.1 translation elongation factor Ts -
  EL075_RS07455 (NCTC7291_01533) rpsB 1554323..1555111 (-) 789 WP_002466032.1 30S ribosomal protein S2 -
  EL075_RS07460 (NCTC7291_01534) codY 1555418..1556191 (-) 774 WP_002450557.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  EL075_RS07465 (NCTC7291_01535) hslU 1556215..1557618 (-) 1404 WP_015365077.1 ATP-dependent protease ATPase subunit HslU -
  EL075_RS07470 (NCTC7291_01536) hslV 1557707..1558252 (-) 546 WP_002450559.1 ATP-dependent protease subunit HslV -
  EL075_RS07475 (NCTC7291_01537) xerC 1558249..1559142 (-) 894 WP_126403211.1 tyrosine recombinase XerC -
  EL075_RS07480 (NCTC7291_01538) trmFO 1559307..1560614 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EL075_RS07485 (NCTC7291_01539) topA 1560731..1562806 (-) 2076 WP_026088907.1 type I DNA topoisomerase -
  EL075_RS07490 (NCTC7291_01540) dprA 1562984..1563859 (-) 876 WP_373364739.1 DNA-processing protein DprA Machinery gene
  EL075_RS07495 (NCTC7291_01541) sucD 1564094..1564999 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  EL075_RS07500 (NCTC7291_01542) sucC 1565021..1566187 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  EL075_RS07505 (NCTC7291_01543) - 1566295..1567065 (-) 771 WP_002466053.1 ribonuclease HII -
  EL075_RS07510 (NCTC7291_01544) ylqF 1567058..1567933 (-) 876 WP_002466050.1 ribosome biogenesis GTPase YlqF -
  EL075_RS07515 (NCTC7291_01545) - 1568233..1570833 (+) 2601 WP_126403212.1 YfhO family protein -
  EL075_RS07520 (NCTC7291_01546) - 1570826..1573435 (+) 2610 WP_019235877.1 YfhO family protein -
  EL075_RS07525 (NCTC7291_01547) rplS 1573601..1573951 (-) 351 WP_002450570.1 50S ribosomal protein L19 -
  EL075_RS07530 (NCTC7291_01548) trmD 1574057..1574794 (-) 738 WP_002466037.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EL075_RS07535 (NCTC7291_01549) rimM 1574794..1575297 (-) 504 WP_002466057.1 ribosome maturation factor RimM -
  EL075_RS07540 (NCTC7291_01550) rpsP 1575465..1575740 (-) 276 WP_002466054.1 30S ribosomal protein S16 -
  EL075_RS07545 (NCTC7291_01551) ffh 1576272..1577639 (-) 1368 WP_002450574.1 signal recognition particle protein -
  EL075_RS07550 (NCTC7291_01552) - 1577664..1577996 (-) 333 WP_002466066.1 putative DNA-binding protein -
  EL075_RS07555 (NCTC7291_01553) ftsY 1577983..1579227 (-) 1245 WP_002466030.1 signal recognition particle-docking protein FtsY -
  EL075_RS07560 (NCTC7291_01554) smc 1579224..1582793 (-) 3570 WP_015365084.1 chromosome segregation protein SMC -
  EL075_RS07565 (NCTC7291_01555) rnc 1582946..1583674 (-) 729 WP_015365085.1 ribonuclease III -
  EL075_RS07570 (NCTC7291_01556) - 1583785..1584018 (-) 234 WP_001830184.1 acyl carrier protein -
  EL075_RS07575 (NCTC7291_01557) fabG 1584231..1584965 (-) 735 WP_015365086.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  EL075_RS07580 (NCTC7291_01558) fabD 1584965..1585885 (-) 921 WP_002466912.1 ACP S-malonyltransferase -
  EL075_RS07585 (NCTC7291_01559) plsX 1585878..1586864 (-) 987 WP_015365088.1 phosphate acyltransferase PlsX -
  EL075_RS07590 (NCTC7291_01560) fapR 1586857..1587426 (-) 570 WP_002466907.1 transcription factor FapR -
  EL075_RS07595 (NCTC7291_01561) recG 1587576..1589624 (-) 2049 WP_002466919.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33923.00 Da        Isoelectric Point: 8.6890

>NTDB_id=1119375 EL075_RS07490 WP_373364739.1 1562984..1563859(-) (dprA) [Staphylococcus warneri strain NCTC7291]
MNLNENFLPKLYWSHFTTSQIHQFYRYNPHIFQMTSNEQEISLLYWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDEDYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1119375 EL075_RS07490 WP_373364739.1 1562984..1563859(-) (dprA) [Staphylococcus warneri strain NCTC7291]
ATGAATTTGAACGAAAACTTTTTACCTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CAACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAATTTCATTATTATATTGGATTACTCAACATCATCCTACGC
TTTTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAGATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

55.634

97.595

0.543
  dprA Staphylococcus aureus MW2

55.634

97.595

0.543

Multiple sequence alignment