Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EL068_RS01185 Genome accession   NZ_LR134242
Coordinates   266474..267139 (+) Length   221 a.a.
NCBI ID   WP_047211221.1    Uniprot ID   -
Organism   Staphylococcus warneri strain NCTC4133     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 261474..272139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL068_RS01165 (NCTC4133_00238) - 262071..262520 (+) 450 WP_002467363.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL068_RS01170 (NCTC4133_00239) - 262755..264218 (+) 1464 WP_058709311.1 poly-gamma-glutamate hydrolase family protein -
  EL068_RS01175 (NCTC4133_00240) - 264399..264500 (+) 102 WP_015364644.1 SE2200 family small protein -
  EL068_RS01180 (NCTC4133_00241) - 264583..266037 (-) 1455 WP_126510185.1 alkaline phosphatase -
  EL068_RS11725 (NCTC4133_00242) - 266294..266452 (+) 159 WP_002467360.1 hypothetical protein -
  EL068_RS01185 (NCTC4133_00243) braR 266474..267139 (+) 666 WP_047211221.1 response regulator transcription factor Regulator
  EL068_RS01190 (NCTC4133_00244) braS 267145..268041 (+) 897 WP_047211220.1 sensor histidine kinase Regulator
  EL068_RS01195 (NCTC4133_00245) - 268145..268891 (+) 747 WP_049414576.1 ABC transporter ATP-binding protein -
  EL068_RS01200 (NCTC4133_00246) - 268909..270903 (+) 1995 WP_232013275.1 ABC transporter permease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25499.62 Da        Isoelectric Point: 4.9722

>NTDB_id=1119319 EL068_RS01185 WP_047211221.1 266474..267139(+) (braR) [Staphylococcus warneri strain NCTC4133]
MKILIVEDDLVIAESLASELKKWNYDVKMAKQFSHVLDDFKDYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1119319 EL068_RS01185 WP_047211221.1 266474..267139(+) (braR) [Staphylococcus warneri strain NCTC4133]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAGTGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAGTTTTCGCATGTTTTAGATGATTTCAAAGACTATCTACCTGACCTAGTACTACTAGATATTAATT
TACCAACTTTAAATGGCTTCCATTGGTGCCAAGAAATGAGAAAAATCTCAAACGTACCTATTATATTTATTAGTTCAAGG
ACAGATAATATGGATCAAATAATGGCGATACAAATGGGTGGCGATGATTTTATTGAGAAACCATTTAATTTATCGTTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAATAATGAATTAAATGTTAAGGGATGTA
AACTTATCGTTGATGAGGCTAAGTTAATGTTTCAAGATGATGTGACACAACTGTCTTTAACAGAACTTCAAATCGTTAAA
CTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCTGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGATATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792

Multiple sequence alignment