Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE2   Type   Regulator
Locus tag   EL020_RS09710 Genome accession   NZ_LR134203
Coordinates   396014..396466 (-) Length   150 a.a.
NCBI ID   WP_231997006.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 391014..401466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS01985 (NCTC11436_00413) - 391326..392264 (-) 939 WP_020917484.1 3'-5' exoribonuclease YhaM family protein -
  EL020_RS01990 (NCTC11436_00414) rmuC 392254..393528 (-) 1275 WP_020917485.1 DNA recombination protein RmuC -
  EL020_RS01995 (NCTC11436_00415) - 393530..394162 (-) 633 WP_020917486.1 thiamine diphosphokinase -
  EL020_RS02000 (NCTC11436_00416) rpe 394155..394817 (-) 663 WP_020917487.1 ribulose-phosphate 3-epimerase -
  EL020_RS02005 (NCTC11436_00417) rsgA 394824..395696 (-) 873 WP_058814253.1 ribosome small subunit-dependent GTPase A -
  EL020_RS09710 (NCTC11436_00419) comE/comE2 396014..396466 (-) 453 WP_231997006.1 LytR/AlgR family response regulator transcription factor Regulator
  EL020_RS09715 (NCTC11436_00420) comE/comE2 396520..396747 (-) 228 WP_228380495.1 hypothetical protein Regulator
  EL020_RS02020 (NCTC11436_00421) comD/comD2 397305..398138 (-) 834 WP_126402358.1 sensor histidine kinase Regulator
  EL020_RS02025 (NCTC11436_00422) - 399033..399326 (-) 294 WP_126402359.1 bacteriocin immunity protein -
  EL020_RS02030 (NCTC11436_00423) - 399354..399659 (-) 306 WP_058832827.1 bacteriocin immunity protein -
  EL020_RS02035 - 399672..399821 (-) 150 WP_020917491.1 hypothetical protein -
  EL020_RS02040 (NCTC11436_00424) rsmA 400228..401100 (-) 873 WP_004233302.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17813.77 Da        Isoelectric Point: 9.7811

>NTDB_id=1118991 EL020_RS09710 WP_231997006.1 396014..396466(-) (comE/comE2) [Streptococcus lutetiensis strain NCTC11436]
MLLTYRAQVSALNFIDKTDKDDAIKDNFKKCLQKVFEDQGFNIPKKIFVFENNKTKIRIPLEDILYFETAESHRLKLITK
TGQCHFYGSIKEVMQANQKLFRCHKSYLINLNNIVRLDKKEGLVYFDDDKACYVSRKYIKDLRSKMENLK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1118991 EL020_RS09710 WP_231997006.1 396014..396466(-) (comE/comE2) [Streptococcus lutetiensis strain NCTC11436]
ATGTTATTGACTTATCGAGCTCAAGTTAGTGCACTTAATTTTATTGATAAAACAGATAAAGATGATGCGATAAAAGATAA
TTTTAAAAAATGCTTGCAAAAGGTCTTTGAGGACCAAGGTTTTAACATTCCTAAGAAAATATTTGTTTTTGAAAATAACA
AAACGAAAATCCGCATTCCCTTGGAAGATATCCTTTATTTTGAAACTGCGGAAAGTCATCGCCTGAAGTTGATTACAAAA
ACTGGGCAATGTCATTTTTATGGTTCAATCAAAGAAGTGATGCAAGCTAATCAGAAATTATTTAGATGTCATAAATCATA
TCTGATTAACCTAAATAATATTGTTAGGTTAGATAAAAAAGAAGGTTTGGTTTATTTTGACGATGATAAAGCTTGTTATG
TTTCTAGAAAATATATCAAAGACTTAAGGTCAAAAATGGAAAATCTGAAATAG

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(57-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE2 Streptococcus equinus JB1

97.333

100

0.973
  comE/comE1 Streptococcus equinus JB1

41.497

98

0.407

Multiple sequence alignment