Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL020_RS01585 Genome accession   NZ_LR134203
Coordinates   310743..311249 (-) Length   168 a.a.
NCBI ID   WP_126402351.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 305743..316249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS01555 (NCTC11436_00320) - 307202..308146 (+) 945 WP_020917419.1 magnesium transporter CorA family protein -
  EL020_RS01560 (NCTC11436_00321) - 308420..309076 (+) 657 WP_126402349.1 DUF1129 domain-containing protein -
  EL020_RS01565 (NCTC11436_00322) - 309117..309338 (-) 222 WP_126402350.1 hypothetical protein -
  EL020_RS01570 (NCTC11436_00324) - 309545..309769 (-) 225 WP_043895293.1 helix-turn-helix domain-containing protein -
  EL020_RS09685 (NCTC11436_00325) - 309771..310097 (-) 327 WP_231997003.1 hypothetical protein -
  EL020_RS09690 (NCTC11436_00326) - 310119..310295 (-) 177 WP_230318086.1 hypothetical protein -
  EL020_RS01580 (NCTC11436_00327) rpsR 310443..310682 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  EL020_RS01585 (NCTC11436_00328) ssbA 310743..311249 (-) 507 WP_126402351.1 single-stranded DNA-binding protein Machinery gene
  EL020_RS01590 (NCTC11436_00329) rpsF 311261..311551 (-) 291 WP_006531977.1 30S ribosomal protein S6 -
  EL020_RS01595 (NCTC11436_00330) - 311748..311894 (-) 147 WP_228380491.1 ATP-dependent protease -
  EL020_RS01600 (NCTC11436_00331) - 312085..312405 (-) 321 WP_269461560.1 hypothetical protein -
  EL020_RS09695 - 312411..312596 (-) 186 WP_020917427.1 hypothetical protein -
  EL020_RS01605 (NCTC11436_00332) - 312669..313298 (-) 630 WP_020917428.1 hypothetical protein -
  EL020_RS01610 (NCTC11436_00333) lepB 313354..313938 (-) 585 Protein_328 signal peptidase I -
  EL020_RS09385 - 313925..314143 (-) 219 Protein_329 DNA repair protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18657.27 Da        Isoelectric Point: 4.7294

>NTDB_id=1118939 EL020_RS01585 WP_126402351.1 310743..311249(-) (ssbA) [Streptococcus lutetiensis strain NCTC11436]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1118939 EL020_RS01585 WP_126402351.1 310743..311249(-) (ssbA) [Streptococcus lutetiensis strain NCTC11436]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGTCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.551

100

0.631
  ssb Latilactobacillus sakei subsp. sakei 23K

61.176

100

0.619
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.095

0.363

Multiple sequence alignment