Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL064_RS02695 Genome accession   NZ_LR134178
Coordinates   608355..608945 (-) Length   196 a.a.
NCBI ID   WP_128130437.1    Uniprot ID   -
Organism   Legionella sainthelensi strain NCTC12450     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603355..613945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL064_RS02670 (NCTC12450_00566) prmC 603456..604262 (-) 807 WP_115700482.1 peptide chain release factor N(5)-glutamine methyltransferase -
  EL064_RS02675 (NCTC12450_00567) prfA 604255..605343 (-) 1089 WP_027270751.1 peptide chain release factor 1 -
  EL064_RS02680 (NCTC12450_00568) hemA 605327..606601 (-) 1275 WP_101899509.1 glutamyl-tRNA reductase -
  EL064_RS02685 (NCTC12450_00569) - 606969..607256 (+) 288 WP_101899510.1 hypothetical protein -
  EL064_RS02690 (NCTC12450_00570) - 607268..608332 (+) 1065 WP_101899511.1 site-2 protease family protein -
  EL064_RS02695 (NCTC12450_00571) comFC 608355..608945 (-) 591 WP_128130437.1 ComF family protein Machinery gene
  EL064_RS02700 (NCTC12450_00572) bioC 609098..609955 (+) 858 WP_115700488.1 malonyl-ACP O-methyltransferase BioC -
  EL064_RS02705 (NCTC12450_00574) - 610162..610959 (-) 798 WP_128129512.1 LirA/MavJ family T4SS effector -
  EL064_RS02710 (NCTC12450_00575) - 611090..611971 (-) 882 WP_027270758.1 polyprenyl synthetase family protein -
  EL064_RS02715 (NCTC12450_00576) - 611964..612182 (-) 219 WP_101899515.1 exodeoxyribonuclease VII small subunit -
  EL064_RS02720 (NCTC12450_00577) radA 612358..613710 (+) 1353 WP_115700494.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22347.17 Da        Isoelectric Point: 9.8789

>NTDB_id=1118795 EL064_RS02695 WP_128130437.1 608355..608945(-) (comFC) [Legionella sainthelensi strain NCTC12450]
MPLLGPGCRYCAYPLPDTHFLVCGNCIKQPPSFDRAFIKYTFEEPLRSLLHQFKYHEGLYLTSFLSYLIFKSLSNQADMP
QCLIPVPMHSQRIKQRGFNQAAVLARSLAKKLQLPCNLFSCQKTLNTKPQAGLDEKQRRKNLRSAFITQKLPYQHVAIID
DLLTTGNTANELARTLKKSGVKQVDVWCCARAIEKQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1118795 EL064_RS02695 WP_128130437.1 608355..608945(-) (comFC) [Legionella sainthelensi strain NCTC12450]
ATGCCTTTGTTAGGCCCTGGTTGTCGCTATTGTGCTTATCCCTTACCTGACACCCATTTTCTCGTCTGCGGAAATTGTAT
TAAACAACCACCCTCTTTTGATAGAGCATTCATAAAGTACACTTTTGAAGAGCCACTGCGAAGCCTTTTACATCAATTCA
AATATCATGAGGGGCTTTATCTTACATCTTTTTTAAGCTATTTAATTTTTAAATCACTATCAAACCAAGCAGATATGCCT
CAGTGTTTGATCCCTGTCCCCATGCATTCACAACGAATCAAACAACGTGGATTTAACCAAGCCGCCGTCTTAGCTCGTTC
TTTAGCTAAAAAATTACAGCTCCCTTGTAATTTATTCAGTTGCCAAAAAACGCTCAATACAAAACCTCAAGCAGGTCTGG
ATGAAAAACAAAGGAGAAAAAATTTACGCTCTGCCTTTATAACCCAAAAACTTCCTTATCAGCATGTCGCCATTATAGAT
GATCTTCTTACCACCGGTAATACCGCAAATGAACTGGCGCGCACCTTAAAGAAATCCGGAGTAAAGCAGGTGGATGTTTG
GTGTTGTGCACGCGCCATAGAAAAACAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila strain ERS1305867

61.735

100

0.617
  comFC Legionella pneumophila str. Paris

62.051

99.49

0.617
  comF Haemophilus influenzae 86-028NP

36.735

100

0.367

Multiple sequence alignment