Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   EL022_RS15040 Genome accession   NZ_LR134173
Coordinates   3508981..3511215 (+) Length   744 a.a.
NCBI ID   WP_081776860.1    Uniprot ID   -
Organism   Legionella cherrii strain NCTC11976     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503981..3516215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS15025 (NCTC11976_03125) - 3504243..3504773 (+) 531 WP_193392440.1 pilus assembly protein -
  EL022_RS15030 (NCTC11976_03126) - 3504786..3508265 (+) 3480 WP_028379792.1 PilC/PilY family type IV pilus protein -
  EL022_RS15035 (NCTC11976_03127) pilE 3508277..3508699 (+) 423 WP_028379791.1 type IV pilin protein Machinery gene
  EL022_RS15040 (NCTC11976_03128) comEC 3508981..3511215 (+) 2235 WP_081776860.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL022_RS15045 (NCTC11976_03129) - 3511433..3512482 (+) 1050 WP_028379789.1 trifunctional transcriptional activator/DNA repair protein Ada/methylated-DNA--[protein]-cysteine S-methyltransferase -
  EL022_RS15050 (NCTC11976_03130) - 3512600..3513238 (-) 639 WP_028379788.1 hypothetical protein -
  EL022_RS15055 (NCTC11976_03131) - 3513400..3513627 (-) 228 WP_028379787.1 hypothetical protein -
  EL022_RS15060 (NCTC11976_03132) - 3513925..3514740 (-) 816 WP_028379786.1 mechanosensitive ion channel family protein -
  EL022_RS15065 (NCTC11976_03133) - 3515019..3515351 (-) 333 WP_028379785.1 hypothetical protein -
  EL022_RS15070 (NCTC11976_03134) - 3515505..3515978 (+) 474 WP_028379784.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83905.44 Da        Isoelectric Point: 9.7566

>NTDB_id=1118787 EL022_RS15040 WP_081776860.1 3508981..3511215(+) (comEC) [Legionella cherrii strain NCTC11976]
MFAWLHQSLVLPKGIANIKTLSKHAAERQIPGGTKHGTGVLASVHEDLSTLPTTQGFSAVAFQKRSIAVIPKVTIEGTIA
SIPTQDFTKTQFLLALEQYDHLPAQGLIQLSWYKNAPKLHSGQRWRFTVKLKRPRNYLNPGSMDYVSSLAARHIFWIGYI
LPQENKLLNESPSNFSWLRLREYLSNQLTQLAPDQSTAGVVEALTLNLTSHISQENWDLFRRTGTTHLFGISGEHIALIS
GMIYWLVRWLWCKSARCCLLIPAPYVASIIGLLAAVCYAFLAGFAPPVQRALIGCFFYTLYRLGKLRFSTWQAWRYALFG
VLCIEPHAVFMQGFYFSFIAVACLLLTQQRWRLKGYKGNLAIQLSCLIGLMPLTLHWYAYGSINGFIANLFAIPLVGLLI
VPLALITMTFCSWSFAGLLMKLLALLIALLFKGLNLIEHLAHININGSIQGMEWVIVLMGVLLMWVLLPIKPFQWIAPLW
VLLAVFPHQTIRSPGEAVIDILDVGQGLAVVVRTQNHVLIYDTGDRFFQGNDLGKMVILPYLKTLRVNKIDAVVISHPDK
DHRGGLNSLENGVLVAKRLVNEPFYYNNHGVRCHDYPPWRWDKVYFRFLPITTHFKNKNNNSCILQISTEAGKVLLTGDI
EKTAEDYLIRTYGDELASDVLIVPHHGSKTSSSYRFLLEVAPRYAIASLGFDNRFHFPHAKTLARMKSLNIPFYRTDHCG
MTQITLPVQGEIKSPICYSGLKKV

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=1118787 EL022_RS15040 WP_081776860.1 3508981..3511215(+) (comEC) [Legionella cherrii strain NCTC11976]
ATGTTCGCTTGGCTGCACCAATCTTTGGTTTTACCCAAAGGAATAGCAAATATTAAAACTCTTTCGAAACACGCTGCGGA
GAGACAAATACCAGGAGGAACGAAGCACGGAACCGGAGTGCTCGCATCAGTACATGAAGATTTGAGCACCCTACCGACAA
CGCAGGGGTTCTCTGCAGTAGCGTTTCAAAAGAGATCTATTGCGGTAATACCCAAGGTCACAATAGAAGGAACCATTGCA
TCCATTCCTACCCAGGATTTTACCAAAACCCAATTTTTATTAGCTCTTGAACAATACGATCATCTTCCTGCACAAGGTTT
AATTCAATTATCCTGGTATAAAAATGCCCCCAAGTTACATTCAGGACAACGATGGCGATTCACGGTCAAATTGAAAAGGC
CACGCAATTATCTTAATCCTGGAAGCATGGATTACGTGAGCTCACTTGCAGCACGGCATATCTTTTGGATCGGTTATATT
CTTCCCCAAGAAAATAAACTGCTTAATGAATCACCTTCTAATTTTAGTTGGCTGCGATTACGTGAGTATTTAAGCAATCA
ACTCACCCAATTAGCCCCAGATCAATCCACAGCAGGTGTTGTTGAAGCCTTAACTTTAAATTTAACAAGCCATATTAGCC
AAGAAAATTGGGATTTATTTAGGCGCACAGGCACAACTCATCTTTTTGGAATCTCTGGGGAGCATATTGCATTGATATCC
GGGATGATTTATTGGCTGGTTCGCTGGTTATGGTGTAAAAGTGCGCGCTGCTGCTTATTGATTCCTGCCCCCTACGTAGC
CAGCATTATAGGTCTCTTAGCTGCTGTATGTTATGCCTTTTTAGCGGGATTTGCCCCACCGGTACAAAGGGCATTAATCG
GTTGTTTCTTTTATACGCTCTATCGCTTAGGAAAATTGCGCTTTTCTACCTGGCAAGCATGGCGTTATGCTTTGTTTGGG
GTTTTATGTATTGAGCCTCATGCAGTGTTCATGCAAGGATTTTATTTTTCATTCATCGCAGTTGCTTGTTTGCTTTTGAC
ACAACAACGCTGGAGATTAAAAGGTTATAAAGGAAATTTAGCCATACAATTGAGTTGTTTAATTGGACTGATGCCTTTAA
CCCTGCACTGGTATGCTTATGGTTCCATAAATGGATTTATTGCGAACTTATTTGCTATTCCTTTGGTTGGTCTACTGATT
GTCCCTTTAGCATTAATCACCATGACGTTCTGTTCTTGGAGTTTTGCTGGTTTATTGATGAAACTTTTGGCCTTACTGAT
TGCCTTATTATTTAAAGGATTAAATTTAATTGAGCATTTGGCACACATTAATATCAATGGATCCATTCAAGGTATGGAAT
GGGTTATTGTTCTAATGGGAGTACTTTTGATGTGGGTTTTATTGCCAATTAAGCCCTTTCAATGGATTGCACCACTGTGG
GTTCTACTCGCCGTTTTTCCTCATCAAACGATACGCTCCCCAGGAGAAGCAGTGATTGATATTTTAGATGTTGGCCAAGG
ATTGGCAGTAGTCGTAAGGACTCAAAATCATGTTCTGATCTACGATACCGGAGATCGATTTTTCCAAGGGAATGATTTAG
GAAAAATGGTGATCTTGCCTTATCTTAAAACGTTAAGAGTCAATAAAATTGATGCTGTAGTTATTAGCCATCCAGATAAA
GATCACCGGGGCGGACTTAACTCGCTGGAGAATGGGGTACTCGTAGCGAAACGATTAGTAAACGAGCCTTTTTATTATAA
TAATCATGGGGTGCGATGTCATGATTACCCGCCATGGAGATGGGATAAGGTGTATTTTCGTTTTTTGCCTATCACCACTC
ATTTTAAAAATAAAAATAACAATTCGTGTATTTTACAAATAAGTACAGAAGCTGGAAAAGTACTCTTAACCGGCGACATC
GAAAAGACAGCCGAAGATTATTTGATAAGAACGTATGGAGACGAACTCGCATCTGATGTTTTAATTGTTCCCCATCATGG
GAGTAAAACCTCGTCTTCTTATCGATTTTTACTGGAGGTTGCTCCCCGTTATGCAATAGCTTCTTTAGGTTTTGACAATC
GCTTTCATTTTCCACATGCTAAAACATTAGCACGTATGAAATCCTTGAATATTCCCTTTTATAGAACGGACCATTGTGGG
ATGACACAAATCACCTTGCCTGTTCAAGGAGAAATTAAAAGCCCGATTTGTTATAGTGGCCTTAAAAAGGTGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-689)

Competence protein (Competence)

(204-470)

Domain of unknown function (DUF4131) (DUF4131)

(71-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

63.378

89.919

0.57
  comEC Legionella pneumophila strain ERS1305867

62.78

89.919

0.565

Multiple sequence alignment