Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EL022_RS06295 Genome accession   NZ_LR134173
Coordinates   1460195..1460899 (-) Length   234 a.a.
NCBI ID   WP_338418470.1    Uniprot ID   -
Organism   Legionella cherrii strain NCTC11976     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455195..1465899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL022_RS06270 (NCTC11976_01302) prfA 1455388..1456476 (-) 1089 WP_028381214.1 peptide chain release factor 1 -
  EL022_RS06275 (NCTC11976_01303) hemA 1456460..1457734 (-) 1275 WP_028381213.1 glutamyl-tRNA reductase -
  EL022_RS06280 (NCTC11976_01304) - 1458056..1458337 (+) 282 WP_028381212.1 hypothetical protein -
  EL022_RS06285 (NCTC11976_01305) - 1458349..1459413 (+) 1065 WP_028381211.1 site-2 protease family protein -
  EL022_RS06290 (NCTC11976_01306) - 1459625..1459978 (+) 354 WP_035900856.1 hypothetical protein -
  EL022_RS06295 (NCTC11976_01307) comFC 1460195..1460899 (-) 705 WP_338418470.1 ComF family protein Machinery gene
  EL022_RS06300 (NCTC11976_01308) bioC 1460936..1461793 (+) 858 WP_028381208.1 malonyl-ACP O-methyltransferase BioC -
  EL022_RS06305 (NCTC11976_01309) - 1461854..1462741 (-) 888 WP_028381207.1 polyprenyl synthetase family protein -
  EL022_RS06310 (NCTC11976_01310) - 1462731..1462952 (-) 222 WP_028381206.1 exodeoxyribonuclease VII small subunit -
  EL022_RS06315 (NCTC11976_01311) radA 1463135..1464487 (+) 1353 WP_028381205.1 DNA repair protein RadA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26766.42 Da        Isoelectric Point: 9.6355

>NTDB_id=1118762 EL022_RS06295 WP_338418470.1 1460195..1460899(-) (comFC) [Legionella cherrii strain NCTC11976]
MRQKIWSLTQSLRLYSICTLCNQFHNNKMAVCTPCIDFMPHLGPACQRCAYPLPDPHLQICGRCIKKAPHFDRAYINYTF
EEPLRSLLHQFKYHEGLYLGSFLSHLMVNSLPNIENLPQCLIPVPMHPQRIKARGFNQAAVLVRLLARKLGLPYDITSCQ
KIRNTEPQASLDGEQRQKNLRHAFKSKKLPWQHVAIIDDLLTTGSTANELAFTLKKSGVKQVDIWCCARTVGKL

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1118762 EL022_RS06295 WP_338418470.1 1460195..1460899(-) (comFC) [Legionella cherrii strain NCTC11976]
GTGCGCCAGAAAATATGGAGTTTAACACAAAGTTTACGCTTGTACTCAATATGTACTTTATGTAATCAATTTCATAATAA
TAAAATGGCCGTTTGTACCCCTTGCATTGACTTCATGCCTCATCTAGGCCCTGCGTGCCAACGGTGTGCTTATCCTTTAC
CGGATCCCCATCTGCAAATCTGTGGTCGTTGTATTAAAAAAGCACCTCACTTTGATCGGGCCTATATTAATTATACTTTT
GAAGAACCGCTACGCAGTCTTTTACATCAATTTAAATATCATGAGGGGCTTTATCTAGGCTCTTTTTTAAGTCATTTAAT
GGTTAATTCGCTACCAAACATTGAAAATCTACCCCAGTGTTTAATCCCAGTTCCCATGCATCCACAACGCATTAAAGCAC
GTGGGTTCAATCAAGCCGCAGTTTTGGTTCGTTTGTTGGCTAGAAAATTAGGCCTACCTTACGATATCACCAGTTGTCAA
AAAATTCGCAATACCGAACCGCAAGCAAGCCTTGATGGAGAACAAAGACAAAAAAATTTACGCCATGCCTTCAAAAGTAA
AAAACTCCCCTGGCAGCATGTTGCGATTATTGATGATCTCTTAACTACAGGAAGCACAGCGAATGAACTGGCATTCACTT
TAAAAAAATCAGGGGTGAAACAGGTGGATATTTGGTGTTGTGCACGAACCGTAGGTAAATTGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

65.665

99.573

0.654
  comFC Legionella pneumophila strain ERS1305867

66.154

83.333

0.551

Multiple sequence alignment