Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ELZ63_RS07880 Genome accession   NZ_LR134171
Coordinates   1598736..1599419 (-) Length   227 a.a.
NCBI ID   WP_065245144.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593736..1604419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS07865 (NCTC12699_01570) nrdR 1594525..1594974 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  ELZ63_RS07870 (NCTC12699_01571) recC 1595036..1598410 (-) 3375 WP_065245145.1 exodeoxyribonuclease V subunit gamma -
  ELZ63_RS07875 (NCTC12699_01572) comQ 1598456..1598743 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  ELZ63_RS07880 (NCTC12699_01573) comP 1598736..1599419 (-) 684 WP_065245144.1 DUF2572 family protein Machinery gene
  ELZ63_RS07885 (NCTC12699_01574) comO 1599419..1600135 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  ELZ63_RS07890 (NCTC12699_01575) comN 1600135..1600647 (-) 513 WP_065245142.1 type II secretion system protein Machinery gene
  ELZ63_RS07895 (NCTC12699_01576) suhB 1600847..1601650 (+) 804 WP_065245141.1 inositol-1-monophosphatase -
  ELZ63_RS07900 (NCTC12699_01577) nrfE 1601759..1603666 (+) 1908 WP_065245140.1 heme lyase NrfEFG subunit NrfE -
  ELZ63_RS07905 (NCTC12699_01578) - 1603666..1604196 (+) 531 WP_065245139.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25546.30 Da        Isoelectric Point: 9.3167

>NTDB_id=1118750 ELZ63_RS07880 WP_065245144.1 1598736..1599419(-) (comP) [Haemophilus influenzae strain NCTC12699]
MTTQKGIITLTILIFISGLLSVILLLDDSHLSFFRAQQNQRKHYVERTLQLQRITALKKQTACLDLPLNNDESVKQISIT
LDGATDSIQYFLWCERISLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVTLVRQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1118750 ELZ63_RS07880 WP_065245144.1 1598736..1599419(-) (comP) [Haemophilus influenzae strain NCTC12699]
ATGACAACACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGCTTATTAAGCGTAATCTTATTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGGGCTCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAATTACAAAGAA
TAACAGCCTTGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATAAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACTGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTAGTAACCTTAGTTCGACAATATAGCCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

90.308

100

0.903

Multiple sequence alignment