Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ELZ63_RS07875 Genome accession   NZ_LR134171
Coordinates   1598456..1598743 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593456..1603743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS07865 (NCTC12699_01570) nrdR 1594525..1594974 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  ELZ63_RS07870 (NCTC12699_01571) recC 1595036..1598410 (-) 3375 WP_065245145.1 exodeoxyribonuclease V subunit gamma -
  ELZ63_RS07875 (NCTC12699_01572) comQ 1598456..1598743 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  ELZ63_RS07880 (NCTC12699_01573) comP 1598736..1599419 (-) 684 WP_065245144.1 DUF2572 family protein Machinery gene
  ELZ63_RS07885 (NCTC12699_01574) comO 1599419..1600135 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  ELZ63_RS07890 (NCTC12699_01575) comN 1600135..1600647 (-) 513 WP_065245142.1 type II secretion system protein Machinery gene
  ELZ63_RS07895 (NCTC12699_01576) suhB 1600847..1601650 (+) 804 WP_065245141.1 inositol-1-monophosphatase -
  ELZ63_RS07900 (NCTC12699_01577) nrfE 1601759..1603666 (+) 1908 WP_065245140.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=1118749 ELZ63_RS07875 WP_021034778.1 1598456..1598743(-) (comQ) [Haemophilus influenzae strain NCTC12699]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1118749 ELZ63_RS07875 WP_021034778.1 1598456..1598743(-) (comQ) [Haemophilus influenzae strain NCTC12699]
ATGAATAAAGGAATGTCGCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment