Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ELZ63_RS07890 Genome accession   NZ_LR134171
Coordinates   1600135..1600647 (-) Length   170 a.a.
NCBI ID   WP_065245142.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595135..1605647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS07875 (NCTC12699_01572) comQ 1598456..1598743 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  ELZ63_RS07880 (NCTC12699_01573) comP 1598736..1599419 (-) 684 WP_065245144.1 DUF2572 family protein Machinery gene
  ELZ63_RS07885 (NCTC12699_01574) comO 1599419..1600135 (-) 717 WP_065245143.1 type II secretion system protein J Machinery gene
  ELZ63_RS07890 (NCTC12699_01575) comN 1600135..1600647 (-) 513 WP_065245142.1 type II secretion system protein Machinery gene
  ELZ63_RS07895 (NCTC12699_01576) suhB 1600847..1601650 (+) 804 WP_065245141.1 inositol-1-monophosphatase -
  ELZ63_RS07900 (NCTC12699_01577) nrfE 1601759..1603666 (+) 1908 WP_065245140.1 heme lyase NrfEFG subunit NrfE -
  ELZ63_RS07905 (NCTC12699_01578) - 1603666..1604196 (+) 531 WP_065245139.1 DsbE family thiol:disulfide interchange protein -
  ELZ63_RS07910 (NCTC12699_01579) nrfF 1604193..1605335 (+) 1143 WP_065245138.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19778.90 Da        Isoelectric Point: 8.7271

>NTDB_id=1118752 ELZ63_RS07890 WP_065245142.1 1600135..1600647(-) (comN) [Haemophilus influenzae strain NCTC12699]
MQKGVTLVELLIGLAIISIALNFAAPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFSNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1118752 ELZ63_RS07890 WP_065245142.1 1600135..1600647(-) (comN) [Haemophilus influenzae strain NCTC12699]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGCGCTGAATTTTGCCGCGCCATT
ATGGCAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTTCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

97.059

100

0.971

Multiple sequence alignment