Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   ELZ63_RS07555 Genome accession   NZ_LR134171
Coordinates   1527269..1527616 (-) Length   115 a.a.
NCBI ID   WP_042603648.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522269..1532616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS07530 (NCTC12699_01503) otnI 1522736..1523512 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  ELZ63_RS07535 (NCTC12699_01504) otnC 1523515..1524147 (-) 633 WP_065245175.1 3-oxo-tetronate 4-phosphate decarboxylase -
  ELZ63_RS07540 (NCTC12699_01505) otnK 1524144..1525385 (-) 1242 WP_065245174.1 3-oxo-tetronate kinase -
  ELZ63_RS07545 (NCTC12699_01506) ltnD 1525388..1526293 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  ELZ63_RS07550 (NCTC12699_01507) - 1526464..1527222 (+) 759 WP_065245173.1 DeoR/GlpR family DNA-binding transcription regulator -
  ELZ63_RS07555 (NCTC12699_01508) comE1/comEA 1527269..1527616 (-) 348 WP_042603648.1 helix-hairpin-helix domain-containing protein Machinery gene
  ELZ63_RS07560 (NCTC12699_01509) ispH 1527785..1528729 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ELZ63_RS07565 (NCTC12699_01510) lspA 1528726..1529241 (-) 516 WP_005647898.1 signal peptidase II -
  ELZ63_RS07570 (NCTC12699_01511) - 1529311..1530870 (-) 1560 WP_065245172.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12337.15 Da        Isoelectric Point: 8.0085

>NTDB_id=1118746 ELZ63_RS07555 WP_042603648.1 1527269..1527616(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12699]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGTKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1118746 ELZ63_RS07555 WP_042603648.1 1527269..1527616(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12699]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTACGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAACCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

99.13

0.574
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment