Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BLEG1_RS19300 Genome accession   NZ_CP003923
Coordinates   3859081..3859566 (-) Length   161 a.a.
NCBI ID   WP_038484698.1    Uniprot ID   A0A4Y7WG87
Organism   Shouchella lehensis G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3854081..3864566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLEG1_RS19280 (BleG1_3976) rplI 3855280..3855723 (-) 444 WP_038484688.1 50S ribosomal protein L9 -
  BLEG1_RS19285 (BleG1_3977) - 3855720..3857690 (-) 1971 WP_038484692.1 DHH family phosphoesterase -
  BLEG1_RS19290 (BleG1_3978) - 3857722..3858657 (-) 936 WP_038484694.1 DUF2232 domain-containing protein -
  BLEG1_RS19295 (BleG1_3979) rpsR 3858822..3859055 (-) 234 WP_035396877.1 30S ribosomal protein S18 -
  BLEG1_RS19300 (BleG1_3980) ssbA 3859081..3859566 (-) 486 WP_038484698.1 single-stranded DNA-binding protein Machinery gene
  BLEG1_RS19305 (BleG1_3981) rpsF 3859605..3859892 (-) 288 WP_038484700.1 30S ribosomal protein S6 -
  BLEG1_RS19310 (BleG1_3982) ychF 3860501..3861601 (-) 1101 WP_038484703.1 redox-regulated ATPase YchF -
  BLEG1_RS19315 (BleG1_3983) - 3861650..3861847 (-) 198 WP_038484706.1 DUF951 domain-containing protein -
  BLEG1_RS19320 (BleG1_3984) - 3861912..3862940 (-) 1029 WP_038484709.1 membrane protein -
  BLEG1_RS19325 (BleG1_3985) yyaC 3863025..3863651 (+) 627 WP_038484712.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17566.09 Da        Isoelectric Point: 4.7306

>NTDB_id=111869 BLEG1_RS19300 WP_038484698.1 3859081..3859566(-) (ssbA) [Shouchella lehensis G1]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGKRVFITEVVAESVQFLEPRNSQNNQNQNFGGSQGNYGSGSGNTGSSGGNRSNGYDNDPFSNDGSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=111869 BLEG1_RS19300 WP_038484698.1 3859081..3859566(-) (ssbA) [Shouchella lehensis G1]
TTGTTAAACCGTGTTGTTCTTGTTGGCCGATTAACCCGTGACCCTGAGCTTCGTTTTACCCCGAATGGTGTTGCTGTTGC
GAACTTTACGTTAGCAGTCAACCGTCCATTCTCTAATCAACAAGGGGAAAGAGAAGCGGATTTCATTAATTGTGTTGTTT
GGAGAAAGCCAGCGGAAAACGTAGCGAATTTCTTGAAAAAAGGAAGTTTAGCAGGCGTTGATGGACGAGTTCAAACGCGC
AGTTATGATAATAATGAAGGAAAACGAGTCTTTATAACTGAAGTCGTGGCTGAGAGTGTTCAATTCCTTGAACCTCGTAA
TAGCCAAAACAATCAAAACCAAAACTTCGGTGGTTCTCAAGGAAATTATGGATCAGGTTCAGGGAACACAGGTTCAAGTG
GTGGTAATCGTTCAAACGGTTATGACAATGATCCGTTCTCGAACGATGGTTCAATTGATATTTCTGATGATGACTTACCA
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y7WG87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.535

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.839

0.398

Multiple sequence alignment