Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | ELZ62_RS03150 | Genome accession | NZ_LR134168 |
| Coordinates | 611635..612048 (+) | Length | 137 a.a. |
| NCBI ID | WP_015701647.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NCTC11394 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 606635..617048
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELZ62_RS03130 (NCTC11394_00618) | - | 607123..609717 (-) | 2595 | WP_015701649.1 | penicillin-binding protein 1A | - |
| ELZ62_RS03135 (NCTC11394_00619) | comA | 609816..610613 (+) | 798 | WP_005693722.1 | competence protein A | Machinery gene |
| ELZ62_RS03140 (NCTC11394_00620) | comB | 610614..611120 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| ELZ62_RS03145 (NCTC11394_00621) | comC | 611117..611638 (+) | 522 | WP_015701648.1 | competence protein ComC | Machinery gene |
| ELZ62_RS03150 (NCTC11394_00622) | comD | 611635..612048 (+) | 414 | WP_015701647.1 | pilus assembly protein PilP | Machinery gene |
| ELZ62_RS03155 (NCTC11394_00623) | comE | 612058..613395 (+) | 1338 | WP_015701646.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| ELZ62_RS03160 (NCTC11394_00624) | - | 613408..614094 (+) | 687 | WP_015701645.1 | ComF family protein | - |
| ELZ62_RS03165 (NCTC11394_00625) | nfuA | 614170..614766 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| ELZ62_RS03170 (NCTC11394_00626) | nudC | 614833..615627 (+) | 795 | WP_015701644.1 | NAD(+) diphosphatase | - |
| ELZ62_RS03175 (NCTC11394_00627) | - | 615663..616253 (+) | 591 | WP_015701643.1 | YjaG family protein | - |
| ELZ62_RS03180 (NCTC11394_00628) | - | 616393..616665 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15707.91 Da Isoelectric Point: 4.5625
>NTDB_id=1118677 ELZ62_RS03150 WP_015701647.1 611635..612048(+) (comD) [Haemophilus influenzae strain NCTC11394]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=1118677 ELZ62_RS03150 WP_015701647.1 611635..612048(+) (comD) [Haemophilus influenzae strain NCTC11394]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae Rd KW20 |
97.81 |
100 |
0.978 |