Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ELZ61_RS09515 Genome accession   NZ_LR134167
Coordinates   2010259..2011488 (-) Length   409 a.a.
NCBI ID   WP_241969694.1    Uniprot ID   -
Organism   Avibacterium volantium strain NCTC3438     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005259..2016488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ61_RS09485 (NCTC3438_01936) raiA 2005824..2006144 (-) 321 WP_126373205.1 ribosome-associated translation inhibitor RaiA -
  ELZ61_RS09490 (NCTC3438_01937) - 2006508..2007875 (-) 1368 WP_126373207.1 sodium:alanine symporter family protein -
  ELZ61_RS09495 (NCTC3438_01939) - 2008382..2008648 (-) 267 WP_126373210.1 GNAT family N-acetyltransferase -
  ELZ61_RS09500 (NCTC3438_01940) yacG 2008688..2008891 (-) 204 WP_103853339.1 DNA gyrase inhibitor YacG -
  ELZ61_RS09505 (NCTC3438_01941) coaE 2008884..2009513 (-) 630 WP_126373212.1 dephospho-CoA kinase -
  ELZ61_RS09510 (NCTC3438_01942) - 2009561..2010262 (-) 702 WP_126373214.1 A24 family peptidase -
  ELZ61_RS09515 (NCTC3438_01943) pilC 2010259..2011488 (-) 1230 WP_241969694.1 type II secretion system F family protein Machinery gene
  ELZ61_RS09520 (NCTC3438_01944) manX 2011864..2012847 (+) 984 WP_126373216.1 PTS mannose transporter subunit IIAB -
  ELZ61_RS09525 (NCTC3438_01945) - 2012860..2013663 (+) 804 WP_126373218.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  ELZ61_RS09530 (NCTC3438_01946) - 2013677..2014513 (+) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  ELZ61_RS09535 (NCTC3438_01947) - 2014581..2015162 (+) 582 WP_241969697.1 DUF986 family protein -
  ELZ61_RS09540 (NCTC3438_01948) manA 2015165..2016376 (+) 1212 WP_197717458.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 46941.54 Da        Isoelectric Point: 10.0761

>NTDB_id=1118654 ELZ61_RS09515 WP_241969694.1 2010259..2011488(-) (pilC) [Avibacterium volantium strain NCTC3438]
MNNHKMKLFNWQATNFLQQKQQGMIVAENIEIARQALFQRQLQNIKLQRNWQFPRKPKANELYELINQLALLLKSAVPIK
QSLQLLLQNCTVISLNLWLGRLIEDLESGLSFAQGIEKQGKYFSQQEQQLIQVGEMTGKLAQVCEQIAQYRQHSLILQRK
IQKILLYPMLVLGISVLLTLLLLIFIVPQFAEMYGNNNASLPAFTAFLLHLSEGLQQHFWQLALLFILVLLFIRFRLKRS
AKLITWKNRCINKMPIFGKITQLARLIRFSQALALMLRSGVPLNMALQSFFPKQQSWQVEKSDVADPVLNQAVETALYWL
NQGYKFSDSVASDFFPMTAQQMLKIGEESGQVAQMLQHIADKYQQDLNHQVDLLSQLLEPLLMVIIGGLIGAVLLGMYLP
IFNMGAMIQ

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1118654 ELZ61_RS09515 WP_241969694.1 2010259..2011488(-) (pilC) [Avibacterium volantium strain NCTC3438]
ATGAACAATCACAAAATGAAACTGTTTAATTGGCAAGCTACGAATTTTTTGCAACAAAAACAACAAGGTATGATCGTGGC
AGAGAATATTGAAATAGCGCGGCAAGCGTTGTTTCAACGACAGTTGCAAAATATCAAGCTGCAACGCAACTGGCAATTTC
CGCGTAAACCGAAAGCGAATGAATTGTATGAGCTGATTAACCAGCTGGCGTTACTGCTGAAATCCGCCGTGCCGATTAAG
CAAAGTTTGCAATTATTGCTGCAGAATTGCACTGTGATTTCTTTAAATCTATGGCTTGGGCGATTGATAGAAGATCTTGA
AAGCGGTTTAAGTTTTGCACAAGGAATTGAAAAACAAGGGAAATATTTTTCACAACAGGAACAACAGCTAATTCAAGTGG
GCGAAATGACAGGCAAGCTCGCGCAAGTGTGTGAGCAAATTGCACAATATCGTCAGCACTCGTTAATTCTGCAACGAAAA
ATCCAAAAAATCTTGCTTTATCCTATGTTGGTGCTGGGCATTTCCGTGCTTTTGACCTTGTTGTTGCTGATTTTTATCGT
GCCGCAATTTGCTGAAATGTACGGCAATAATAATGCTAGCTTACCTGCATTTACCGCATTTTTATTACATCTTTCCGAAG
GGTTGCAACAACATTTTTGGCAACTTGCTTTATTATTTATACTGGTTTTGCTGTTTATTCGCTTTCGCCTAAAGCGTTCG
GCAAAGCTAATAACGTGGAAAAATAGATGTATCAATAAAATGCCAATTTTCGGCAAGATTACCCAGTTAGCCCGCTTGAT
TCGCTTTAGCCAAGCCCTTGCATTAATGCTGCGTTCAGGCGTACCGTTAAATATGGCATTGCAATCTTTTTTCCCAAAAC
AGCAAAGCTGGCAGGTGGAAAAAAGCGATGTGGCTGATCCCGTGCTAAATCAAGCGGTGGAAACGGCGTTATATTGGCTC
AATCAAGGTTATAAATTTTCCGATAGCGTAGCTAGTGATTTCTTTCCAATGACAGCACAACAAATGCTAAAAATAGGTGA
AGAAAGTGGGCAGGTAGCACAGATGCTACAACATATTGCTGATAAATATCAGCAGGATCTCAATCACCAAGTGGATCTAC
TTTCTCAACTGCTTGAACCCTTGCTAATGGTGATTATTGGCGGTTTAATCGGTGCCGTGTTGCTAGGAATGTATTTACCG
ATTTTCAATATGGGAGCGATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(66-188)

Type II secretion system (T2SS), protein F (T2SSF)

(269-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

60.05

98.533

0.592
  pilC Haemophilus influenzae 86-028NP

59.553

98.533

0.587
  pilC Glaesserella parasuis strain SC1401

41.32

100

0.413

Multiple sequence alignment