Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EL050_RS13635 Genome accession   NZ_LR134165
Coordinates   2718813..2719106 (-) Length   97 a.a.
NCBI ID   WP_025811159.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain NCTC8721     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713813..2724106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL050_RS13590 (NCTC8721_02792) - 2714189..2714983 (-) 795 WP_020452167.1 TasA family protein -
  EL050_RS13595 (NCTC8721_02793) - 2715056..2715640 (-) 585 WP_020452168.1 signal peptidase I -
  EL050_RS13600 (NCTC8721_02794) tapA 2715637..2716365 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  EL050_RS13605 (NCTC8721_02795) - 2716643..2716963 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  EL050_RS13610 (NCTC8721_02796) - 2716993..2717175 (-) 183 WP_025811164.1 YqzE family protein -
  EL050_RS13615 (NCTC8721_02797) comGG 2717265..2717630 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  EL050_RS13620 (NCTC8721_02798) comGF 2717642..2718124 (-) 483 WP_238550077.1 competence type IV pilus minor pilin ComGF -
  EL050_RS13625 comGE 2718039..2718386 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -
  EL050_RS13630 (NCTC8721_02799) comGD 2718370..2718807 (-) 438 WP_025811160.1 competence type IV pilus minor pilin ComGD -
  EL050_RS13635 (NCTC8721_02800) comGC 2718813..2719106 (-) 294 WP_025811159.1 competence type IV pilus major pilin ComGC Machinery gene
  EL050_RS13640 (NCTC8721_02801) comGB 2719120..2720154 (-) 1035 WP_025811158.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL050_RS13645 (NCTC8721_02802) comGA 2720144..2721208 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  EL050_RS13650 (NCTC8721_02803) - 2721366..2722205 (-) 840 WP_020452179.1 STAS domain-containing protein -
  EL050_RS13660 (NCTC8721_02805) - 2722447..2722824 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  EL050_RS13665 (NCTC8721_02806) - 2723035..2723280 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  EL050_RS13670 (NCTC8721_02807) - 2723316..2723954 (-) 639 WP_025811156.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10657.45 Da        Isoelectric Point: 7.8553

>NTDB_id=1118602 EL050_RS13635 WP_025811159.1 2718813..2719106(-) (comGC) [Bacillus paralicheniformis strain NCTC8721]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVEAQITAYQMDHDGKTPSRADLESEGYVKKNLK
CPNGKAIKISNGNAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1118602 EL050_RS13635 WP_025811159.1 2718813..2719106(-) (comGC) [Bacillus paralicheniformis strain NCTC8721]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTCATCTCCATCCTGCTGTTGATCACCATACC
GAATGTGACCAAGCATAATCAAAGTATTCAAAAGAAAGGATGCGAAGGGTTAATTAATATGGTTGAAGCGCAAATCACGG
CTTATCAAATGGATCATGACGGGAAAACGCCGAGTAGGGCGGACCTTGAATCTGAAGGTTACGTGAAGAAGAACTTAAAG
TGCCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAATGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

71.134

100

0.711
  comGC Staphylococcus aureus MW2

45.263

97.938

0.443
  comGC Staphylococcus aureus N315

45.263

97.938

0.443

Multiple sequence alignment