Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   ELZ60_RS06875 Genome accession   NZ_LR134090
Coordinates   1356585..1357082 (+) Length   165 a.a.
NCBI ID   WP_078061106.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC9555     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351585..1362082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ60_RS06835 (NCTC9555_01292) - 1351629..1352615 (+) 987 WP_000161315.1 ROK family glucokinase -
  ELZ60_RS06840 (NCTC9555_01293) - 1352615..1352944 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ELZ60_RS06845 (NCTC9555_01294) - 1352941..1353564 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ELZ60_RS06850 (NCTC9555_01295) comGA 1353616..1354590 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ELZ60_RS06855 (NCTC9555_01296) comGB 1354562..1355632 (+) 1071 WP_000776418.1 competence type IV pilus assembly protein ComGB Machinery gene
  ELZ60_RS06860 (NCTC9555_01297) comGC 1355646..1355957 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ELZ60_RS06865 (NCTC9555_01298) comGD 1355935..1356381 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  ELZ60_RS06870 (NCTC9555_01299) comGE 1356368..1356667 (+) 300 WP_000844409.1 hypothetical protein Machinery gene
  ELZ60_RS06875 (NCTC9555_01300) comGF 1356585..1357082 (+) 498 WP_078061106.1 competence type IV pilus minor pilin ComGF Machinery gene
  ELZ60_RS06880 - 1357179..1357325 (+) 147 WP_001789879.1 hypothetical protein -
  ELZ60_RS06885 - 1357315..1357839 (+) 525 WP_001015120.1 shikimate kinase -
  ELZ60_RS06890 (NCTC9555_01302) gcvT 1357997..1359088 (+) 1092 WP_000093343.1 glycine cleavage system aminomethyltransferase GcvT -
  ELZ60_RS06895 (NCTC9555_01303) gcvPA 1359108..1360454 (+) 1347 WP_126509044.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ELZ60_RS06900 (NCTC9555_01304) gcvPB 1360447..1361919 (+) 1473 WP_000202177.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19167.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1118128 ELZ60_RS06875 WP_078061106.1 1356585..1357082(+) (comGF) [Staphylococcus aureus strain NCTC9555]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1118128 ELZ60_RS06875 WP_078061106.1 1356585..1357082(+) (comGF) [Staphylococcus aureus strain NCTC9555]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAACAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGCATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(69-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.171

99.394

0.976
  comGF Staphylococcus aureus MW2

96.951

99.394

0.964

Multiple sequence alignment