Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ELZ47_RS06520 Genome accession   NZ_LR134002
Coordinates   1265211..1267172 (-) Length   653 a.a.
NCBI ID   WP_126435622.1    Uniprot ID   A0AAJ5NP85
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1260211..1272172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS06490 (NCTC10904_01276) proB 1260647..1261756 (-) 1110 WP_126435620.1 glutamate 5-kinase -
  ELZ47_RS06495 (NCTC10904_01277) - 1261872..1262768 (-) 897 WP_125330945.1 RluA family pseudouridine synthase -
  ELZ47_RS06500 (NCTC10904_01278) lspA 1262752..1263219 (-) 468 WP_125330946.1 signal peptidase II -
  ELZ47_RS06505 (NCTC10904_01279) - 1263223..1264125 (-) 903 WP_126435621.1 LysR family transcriptional regulator -
  ELZ47_RS06510 (NCTC10904_01280) - 1264245..1265102 (-) 858 WP_164549569.1 GNAT family N-acetyltransferase -
  ELZ47_RS06520 (NCTC10904_01281) amiA 1265211..1267172 (-) 1962 WP_126435622.1 peptide ABC transporter substrate-binding protein Regulator
  ELZ47_RS06525 (NCTC10904_01282) - 1267457..1270255 (-) 2799 WP_164549570.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  ELZ47_RS06530 (NCTC10904_01283) - 1270492..1271232 (+) 741 WP_125330952.1 hypothetical protein -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72370.07 Da        Isoelectric Point: 4.6669

>NTDB_id=1117819 ELZ47_RS06520 WP_126435622.1 1265211..1267172(-) (amiA) [Streptococcus sanguinis strain NCTC 10904]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTGDVISNLVDGLFENDKYGNLIPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLARPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNPNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPSFVQIGDKDFGTVVGEKLVNYGSQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETSNVQLRY
EKYAEAEAWLLDSGLIIPTISQGATPSVTKSVPFKKAYSPVGVKGSGYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1117819 ELZ47_RS06520 WP_126435622.1 1265211..1267172(-) (amiA) [Streptococcus sanguinis strain NCTC 10904]
ATGAAAGCATCTAAATGGCTGATTGCGACTGGAGTTGCACTGAGTGCCGGGCTATTGCTGACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGATAGCTTGAACTATCTTGCTACAAACCGTGCAACGA
CAGGTGATGTCATTTCCAACCTGGTCGATGGACTTTTTGAAAATGACAAGTACGGGAACCTGATTCCCTCAATCGCCAAG
TCATGGACAGTTTCTAAGGACGGCCTGACCTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAGGCCCAGGACTTTGTGACTGGCTTGAAGTATGCAGCAGATGAAAATTCTGAAGCTATTTATC
TCGTTCAGGATTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTCGACAATGTTGGTGTTAAGGCT
ATTGATGACCACACTCTGCAATACACTCTGGCTCGCCCTGAGCCTTACTGGAACTCTAAAACGACCAGTACGATTCTTTT
CCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAACTTTGGCTCAGTCAAGCCATCTAGCATCCTCTATAATGGTC
CTTACTTGCTCAAGTCTCTGACTTCCAAGTCTGTGATGGAATTTGTCAAAAACCCAAATTACTATGACAAAGACAATGTC
ACTCTGGATAGTATCAAGCTGACCTACTACGATGGAAATGATCAGGAAGCACTGATCCGTAACTTCAGCGATGGCGTTTA
CAGCACAGCTCGTCTCTATCCGAATAGCTCTGGCTTTGCCTCAGTCAAGAAGAAATATGCGGACAATATTGTTTACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTCAACTACAATCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCTACAAACGAAGCAATCATGAACAAAGACTTCCGTCAGGCTATCAACTTTGCCTTTGATCGTACGTCTTA
TGGAGCGCAAGGGAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAATACCTTGGTACCGCCTAGCTTTGTCCAAATTG
GCGACAAGGATTTTGGAACTGTTGTTGGGGAAAAATTAGTTAATTATGGTAGCCAATGGCAAGGAATTGACCTCTCTGAC
GCGCAAGATCCATACTATAATCCTGAAAAAGCTAAGGCGAAATTTGCAGAAGCGAAGCAAGCCTTGCAGGCTAAGGGAGT
TGAATTCCCGATTCACTTAGATATGCCAGTGGATCAGTCTAGCACCATTGGCGTTCAATGGGCTAGCTCAACCAAGCAGT
CTATCGAATCGGCTCTTGGAGCGGAAAATGTCGTCATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAATATCACT
TATTTTGCTAACTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGTTGGACTGGTGACTACCAAGACCCATCTAC
CTATCTTGATACTCTTAATATTAAGAACGGCGGAAGCTTGCAAAACTTTGGTTTTGAACCAGGTCAAGACAATGATAAGA
TTAAAGAGCTGGGCTTGGATACCTATACTAAGATGCTGGAAGAAGCTAATGCTGAAACGAGCAATGTGCAACTGCGTTAC
GAAAAATACGCAGAAGCAGAAGCTTGGTTGCTGGATAGCGGCTTGATTATCCCGACTATTTCTCAGGGAGCAACACCGTC
AGTTACTAAATCAGTCCCATTCAAAAAGGCTTATTCACCAGTTGGTGTCAAAGGTTCAGGCTACAACTTCAAGCTGACCC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATACGAAGCGGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCCCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.03

100

0.553
  amiA3 Streptococcus thermophilus LMD-9

54.795

100

0.551
  amiA3 Streptococcus thermophilus LMG 18311

54.642

100

0.55

Multiple sequence alignment