Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ELZ45_RS04795 Genome accession   NZ_LR133917
Coordinates   945895..946881 (+) Length   328 a.a.
NCBI ID   WP_126497000.1    Uniprot ID   A0AB74Q479
Organism   Staphylococcus aureus strain NCTC8317     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 940895..951881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ45_RS04770 (NCTC8317_00892) opp4B 941108..942070 (+) 963 WP_000239819.1 oligopeptide ABC transporter permease -
  ELZ45_RS04775 (NCTC8317_00893) opp4C 942082..942963 (+) 882 WP_031918645.1 oligopeptide ABC transporter permease -
  ELZ45_RS04780 (NCTC8317_00894) trpS 943005..943994 (-) 990 WP_000448941.1 tryptophan--tRNA ligase -
  ELZ45_RS04785 (NCTC8317_00895) spxA 944289..944684 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ELZ45_RS04790 (NCTC8317_00896) mecA 945055..945774 (+) 720 WP_001217728.1 adaptor protein MecA -
  ELZ45_RS04795 (NCTC8317_00897) coiA 945895..946881 (+) 987 WP_126497000.1 competence protein CoiA family protein Machinery gene
  ELZ45_RS04800 (NCTC8317_00898) pepF 946929..948737 (+) 1809 WP_000082730.1 oligoendopeptidase F -
  ELZ45_RS04805 (NCTC8317_00901) yjbH 949198..950004 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ELZ45_RS04810 (NCTC8317_00902) - 950027..950392 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  ELZ45_RS04815 (NCTC8317_00903) - 950496..951089 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  ELZ45_RS04820 (NCTC8317_00904) - 951275..951622 (+) 348 WP_001242102.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38752.35 Da        Isoelectric Point: 9.6573

>NTDB_id=1117629 ELZ45_RS04795 WP_126497000.1 945895..946881(+) (coiA) [Staphylococcus aureus strain NCTC8317]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPGILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=1117629 ELZ45_RS04795 WP_126497000.1 945895..946881(+) (coiA) [Staphylococcus aureus strain NCTC8317]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGGTATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTACACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985

  coiA Staphylococcus aureus N315

97.866

100

0.979


Multiple sequence alignment