Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   EW030_RS07600 Genome accession   NZ_LR130511
Coordinates   1531826..1532323 (-) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2819 isolate BPH2819     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526826..1537323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW030_RS07575 gcvPB 1526988..1528460 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  EW030_RS07580 gcvPA 1528453..1529799 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EW030_RS07585 gcvT 1529819..1530910 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  EW030_RS07590 - 1531069..1531593 (-) 525 WP_001015120.1 shikimate kinase -
  EW030_RS07595 - 1531583..1531729 (-) 147 WP_001792109.1 hypothetical protein -
  EW030_RS07600 comGF 1531826..1532323 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  EW030_RS07605 comGE 1532241..1532540 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  EW030_RS07610 comGD 1532527..1532973 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  EW030_RS07615 comGC 1532951..1533262 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  EW030_RS07620 comGB 1533276..1534346 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  EW030_RS07625 comGA 1534318..1535292 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  EW030_RS07630 - 1535344..1535967 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  EW030_RS07635 - 1535964..1536293 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  EW030_RS07640 - 1536293..1537279 (-) 987 WP_000161311.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=1116816 EW030_RS07600 WP_001788897.1 1531826..1532323(-) (comGF) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1116816 EW030_RS07600 WP_001788897.1 1531826..1532323(-) (comGF) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964

Multiple sequence alignment