Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   EW021_RS08325 Genome accession   NZ_LR130236
Coordinates   1601191..1602693 (-) Length   500 a.a.
NCBI ID   WP_010921891.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448 isolate 5448     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596191..1607693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW021_RS09765 - 1598149..1598232 (+) 84 Protein_1552 IS3 family transposase -
  EW021_RS08310 amiF 1598270..1599193 (-) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  EW021_RS08315 amiE 1599186..1600256 (-) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  EW021_RS08320 amiD 1600265..1601191 (-) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  EW021_RS08325 amiC 1601191..1602693 (-) 1503 WP_010921891.1 ABC transporter permease Regulator
  EW021_RS08330 amiA 1602758..1604728 (-) 1971 WP_011285389.1 peptide ABC transporter substrate-binding protein Regulator
  EW021_RS08335 pbp3 1605059..1606291 (+) 1233 WP_010921890.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  EW021_RS08340 - 1606459..1607640 (+) 1182 WP_015055912.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56080.41 Da        Isoelectric Point: 10.1893

>NTDB_id=1116526 EW021_RS08325 WP_010921891.1 1601191..1602693(-) (amiC) [Streptococcus pyogenes strain 5448 isolate 5448]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDSFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=1116526 EW021_RS08325 WP_010921891.1 1601191..1602693(-) (amiC) [Streptococcus pyogenes strain 5448 isolate 5448]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATCCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCTTAAACTTAGGGACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTCATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACAGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59.4

100

0.594

Multiple sequence alignment