Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   EW021_RS04915 Genome accession   NZ_LR130236
Coordinates   953525..954835 (-) Length   436 a.a.
NCBI ID   WP_047343328.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448 isolate 5448     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 948525..959835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW021_RS04890 - 949129..950181 (-) 1053 WP_002989701.1 BMP family lipoprotein -
  EW021_RS04895 - 950275..950664 (-) 390 WP_011285547.1 cytidine deaminase -
  EW021_RS04900 - 951323..951910 (-) 588 WP_011285548.1 class I SAM-dependent methyltransferase -
  EW021_RS04905 coaA 952178..953098 (+) 921 WP_010922353.1 type I pantothenate kinase -
  EW021_RS04910 rpsT 953152..953400 (+) 249 WP_009881183.1 30S ribosomal protein S20 -
  EW021_RS04915 ciaH 953525..954835 (-) 1311 WP_047343328.1 sensor histidine kinase Regulator
  EW021_RS04920 ciaR 954828..955502 (-) 675 WP_010922355.1 response regulator transcription factor Regulator
  EW021_RS04925 - 955848..958385 (-) 2538 WP_010922356.1 M1 family metallopeptidase -
  EW021_RS04935 phoU 958590..959243 (-) 654 WP_002984514.1 phosphate signaling complex protein PhoU -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 49987.49 Da        Isoelectric Point: 9.0831

>NTDB_id=1116505 EW021_RS04915 WP_047343328.1 953525..954835(-) (ciaH) [Streptococcus pyogenes strain 5448 isolate 5448]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALADSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLGSIETTSLMNFYGQEEKYHTITVGVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=1116505 EW021_RS04915 WP_047343328.1 953525..954835(-) (ciaH) [Streptococcus pyogenes strain 5448 isolate 5448]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGGCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAGGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTATGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58

  ciaH Streptococcus pneumoniae Rx1

51.598

100

0.518

  ciaH Streptococcus pneumoniae D39

51.598

100

0.518

  ciaH Streptococcus pneumoniae R6

51.598

100

0.518

  ciaH Streptococcus pneumoniae TIGR4

51.598

100

0.518


Multiple sequence alignment