Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EQB41_RS06450 Genome accession   NZ_LR129840
Coordinates   1203163..1203972 (-) Length   269 a.a.
NCBI ID   WP_001289496.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198163..1208972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS06430 - 1200508..1201494 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  EQB41_RS06435 - 1201784..1202527 (-) 744 WP_000725952.1 potassium channel family protein -
  EQB41_RS06440 - 1202574..1202828 (-) 255 WP_001823540.1 type II toxin-antitoxin system RelE family toxin -
  EQB41_RS06445 relB 1202830..1203072 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EQB41_RS06450 vicX 1203163..1203972 (-) 810 WP_001289496.1 MBL fold metallo-hydrolase Regulator
  EQB41_RS06455 micB 1203974..1205323 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EQB41_RS06460 micA 1205316..1206020 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EQB41_RS06465 mutY 1206075..1207250 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  EQB41_RS12625 - 1207347..1207472 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29902.82 Da        Isoelectric Point: 5.9895

>NTDB_id=1116192 EQB41_RS06450 WP_001289496.1 1203163..1203972(-) (vicX) [Streptococcus pneumoniae strain 4496 isolate 4496]
MSEIGFKYSILASGSSGNSFYLETSKNKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1116192 EQB41_RS06450 WP_001289496.1 1203163..1203972(-) (vicX) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
TAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77

Multiple sequence alignment