Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KR485_RS06005 Genome accession   NZ_LR027557
Coordinates   1419576..1421801 (-) Length   741 a.a.
NCBI ID   WP_216091696.1    Uniprot ID   -
Organism   Pseudomonas synxantha strain 10586     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414576..1426801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR485_RS05970 murB 1414947..1415966 (-) 1020 WP_078821647.1 UDP-N-acetylmuramate dehydrogenase -
  KR485_RS05975 - 1415963..1416427 (-) 465 WP_216091693.1 low molecular weight protein-tyrosine-phosphatase -
  KR485_RS05980 kdsB 1416427..1417191 (-) 765 WP_032880648.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KR485_RS05985 - 1417188..1417373 (-) 186 WP_003174668.1 Trm112 family protein -
  KR485_RS05990 lpxK 1417396..1418406 (-) 1011 WP_216091694.1 tetraacyldisaccharide 4'-kinase -
  KR485_RS05995 - 1418406..1418834 (-) 429 WP_216091695.1 biopolymer transporter ExbD -
  KR485_RS06000 exbB 1418831..1419466 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KR485_RS06005 comA 1419576..1421801 (-) 2226 WP_216091696.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KR485_RS06010 - 1421937..1422452 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  KR485_RS06015 - 1422456..1423814 (-) 1359 WP_078821650.1 sensor histidine kinase -
  KR485_RS06020 - 1423801..1424529 (-) 729 WP_005789059.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80294.26 Da        Isoelectric Point: 10.5103

>NTDB_id=1115743 KR485_RS06005 WP_216091696.1 1419576..1421801(-) (comA) [Pseudomonas synxantha strain 10586]
MKTGMFALALGLLVLRWLPALPSGAGLLAMLILALMLLPFRTYPVAFFLVGLSWACISAQWALDDRLQPALDGQTRWVQG
RVIGLPQQTGTGVRFELADSRARNARLPKRIRVSWHGGPTVNSGEYWRLALTLKRPAGLLNFHGFDHEAWLLAQRIGASA
TVKDGERLAPARNAWRDAVRQRLMAVEAHGREAGLAALVLGDGSGLAPEDWQVLQNTGTVHLLVISGQHIGLLAGLIYGL
ISMLARYGCWPRGWPWLPWACGLAFAGALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALNGVLLIEPL
ASLQPGFWLSFAAVAVLVWAFSGRLGPWSVWQIWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLWVPLVGEGVLWLAGGALDGLFKGLALLAAQLPAWVPAEVPLRYWLVSLAGAVIVLLPKGLPFRVLGWPMLLVAV
FPPRDGVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPADLGARVVLPSLQKLGVGQLDMMLLSHADADHAGGA
AAVARGLPIKRVVGGETEGLPAFLATQPCRSGEHWEWDGVAFELWQWPGAIEGNPKSCVLQVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFLQRLAPTAVLISRGRGNAFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFTPPTVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1115743 KR485_RS06005 WP_216091696.1 1419576..1421801(-) (comA) [Pseudomonas synxantha strain 10586]
ATGAAAACAGGGATGTTCGCGCTGGCGCTGGGGTTGCTGGTATTGCGCTGGTTACCCGCATTGCCGTCTGGCGCCGGGTT
GCTGGCTATGCTGATACTGGCCTTGATGCTGCTGCCTTTTCGTACCTATCCTGTGGCGTTTTTTCTGGTCGGCCTGAGTT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGATTGCAACCGGCGCTGGACGGGCAGACGCGCTGGGTACAAGGG
CGTGTCATCGGCTTGCCGCAGCAGACCGGCACGGGCGTGCGATTCGAGTTGGCCGACAGTCGGGCGCGCAATGCACGGCT
GCCCAAACGTATTCGGGTGTCCTGGCACGGCGGGCCGACCGTAAACAGCGGCGAGTACTGGCGTCTGGCACTGACGCTCA
AGCGGCCCGCCGGCCTGCTCAATTTTCATGGCTTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGCGCCAGCGCG
ACGGTGAAGGATGGTGAGCGCCTGGCGCCGGCGCGCAATGCCTGGCGCGATGCCGTTCGCCAGCGCCTGATGGCCGTGGA
AGCGCACGGCCGCGAGGCGGGCCTGGCGGCGTTGGTGCTGGGCGACGGTTCCGGGCTTGCACCTGAGGATTGGCAGGTGT
TGCAGAACACCGGCACGGTGCATCTGCTGGTGATTTCCGGACAGCACATTGGTTTGTTGGCGGGGTTGATCTACGGCTTG
ATCTCTATGTTGGCGCGCTATGGCTGCTGGCCGCGAGGCTGGCCATGGCTGCCATGGGCGTGCGGCTTGGCGTTTGCCGG
GGCGTTGGGCTATGGCCTGCTGGCAGGGTTCGGCGTGCCGGTGCAGCGGGCTTGTGTGATGGTGGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGGTGTGGTGGCCGTTGTTGCTCGCATTGAATGGCGTGTTGCTCATCGAGCCCTTG
GCCAGTCTACAGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTCGCGGTGTTGGTGTGGGCATTCAGCGGGCGCCTGGGGCC
GTGGAGCGTCTGGCAAATCTGGACCCGTCCACAGTGGTTGATCGCAATTGGCTTGTTTCCGGTCCTGCTGGTGTTGGGGT
TGCCCATCAGCCTCAGTGCCCCCGTGGCCAATCTGGTCGCCGTGCCCTGGATCAGCCTGGTAGTACTGCCTTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGGTGCCGTTGGTCGGCGAGGGCGTGTTGTGGCTGGCCGGTGGCGCACTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTCGCTGCACAACTGCCGGCCTGGGTACCGGCTGAGGTACCTTTGAGGTATTGGCTGGTGAGCC
TGGCGGGCGCAGTGATTGTGTTGTTGCCCAAGGGGCTGCCATTCCGAGTGCTGGGTTGGCCCATGCTGTTGGTGGCAGTG
TTTCCACCCAGGGATGGGGTGCCCCATGGCCAGGTGGAGGTGTTGCAACTGGATGTCGGCCAGGGCCAGGCACTGATCCT
GCGTACCCGCCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGCCGATCTGGGCGCGCGCGTGGTCTTGC
CGTCGTTGCAGAAGCTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGCGGTGCC
GCGGCGGTGGCCCGTGGCCTGCCCATCAAGCGTGTGGTAGGCGGTGAAACCGAAGGGCTGCCAGCGTTTCTTGCTACGCA
ACCCTGCAGGAGCGGTGAACATTGGGAGTGGGACGGCGTGGCATTCGAACTGTGGCAATGGCCTGGTGCTATCGAGGGCA
ATCCGAAATCCTGTGTATTGCAGGTCCAGGCCAACGGTGAACGCTTGCTGCTCACCGGTGATATCGATCGCGCCGCCGAG
CAAGCATTTCTGGCCTCGCCGCTGGCGGTTCCGACCGACTGGCTGCAAGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGCCTTTCCTGCAGCGGCTGGCGCCAACCGCGGTGCTGATTTCCCGGGGGCGCGGCAACGCGTTCGGCCATCCGCATC
CGCAGGTGCTGGAGCGCTATCAGGCGCTGGGTAGCCGGGTATATGACAGTGCCGAGCAAGGCGCTGTACGGCTGCGCCTG
GGGGCATTCACGCCACCAACGGTTGCGCGCAGTCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.031

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.383

100

0.368

Multiple sequence alignment