Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KR485_RS06000 Genome accession   NZ_LR027557
Coordinates   1418831..1419466 (-) Length   211 a.a.
NCBI ID   WP_005789055.1    Uniprot ID   A0A7S7MQG5
Organism   Pseudomonas synxantha strain 10586     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413831..1424466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR485_RS05965 - 1414206..1414877 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  KR485_RS05970 murB 1414947..1415966 (-) 1020 WP_078821647.1 UDP-N-acetylmuramate dehydrogenase -
  KR485_RS05975 - 1415963..1416427 (-) 465 WP_216091693.1 low molecular weight protein-tyrosine-phosphatase -
  KR485_RS05980 kdsB 1416427..1417191 (-) 765 WP_032880648.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KR485_RS05985 - 1417188..1417373 (-) 186 WP_003174668.1 Trm112 family protein -
  KR485_RS05990 lpxK 1417396..1418406 (-) 1011 WP_216091694.1 tetraacyldisaccharide 4'-kinase -
  KR485_RS05995 - 1418406..1418834 (-) 429 WP_216091695.1 biopolymer transporter ExbD -
  KR485_RS06000 exbB 1418831..1419466 (-) 636 WP_005789055.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KR485_RS06005 comA 1419576..1421801 (-) 2226 WP_216091696.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KR485_RS06010 - 1421937..1422452 (+) 516 WP_005789057.1 DUF2062 domain-containing protein -
  KR485_RS06015 - 1422456..1423814 (-) 1359 WP_078821650.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22912.07 Da        Isoelectric Point: 7.3615

>NTDB_id=1115742 KR485_RS06000 WP_005789055.1 1418831..1419466(-) (exbB) [Pseudomonas synxantha strain 10586]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1115742 KR485_RS06000 WP_005789055.1 1418831..1419466(-) (exbB) [Pseudomonas synxantha strain 10586]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTAACCCCTGAACACCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTCGACAAGCAAAAACTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCGGCTGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTCGGTTTGCTCGGCACGGTACTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCAGTATTGGCCGGGGGGATTTCCAAGGCATTGATCACCACCGCC
GCCGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAGCGTCGCATCGACGAACTGGTGGTTGGCAT
GGAACAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTAGATCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7MQG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment